Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f04
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 33 0.033
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 31 0.13
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 29 0.41
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 29 0.72
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 28 1.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 2.2
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 2.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 3.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 6.7
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 6.7
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.8
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 25 8.8
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 8.8
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 33.1 bits (72), Expect = 0.033
Identities = 28/97 (28%), Positives = 43/97 (44%)
Frame = +1
Query: 304 KDDLEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVNHNVRTRLD 483
+D+ E+ E Y ++ + + D ++RLEK+DE K + E L + NV L
Sbjct: 104 RDEAEQKAEI--YNRDALNTKQEHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELV 161
Query: 484 EIKRRELERLRHLATKQFELTNDLHVNMGKVPSSEHL 594
E R E++ L Q E + V SSE L
Sbjct: 162 E-SRDEIKELIEKQKVQKESVKSHESELSSVMSSEIL 197
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 31.1 bits (67), Expect = 0.13
Identities = 23/100 (23%), Positives = 47/100 (47%)
Frame = +1
Query: 283 KSEDSEIKDDLEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVNH 462
+S S +++ L EY E + ++A+E RL K DEE + K A+
Sbjct: 1001 ESMASVLQEKLREYSEELDQMSPNLRAIERLETVETRLAKLDEEFAAARKAAK------- 1053
Query: 463 NVRTRLDEIKRRELERLRHLATKQFELTNDLHVNMGKVPS 582
N + R + +K++ L++ + + E + ++ + K P+
Sbjct: 1054 NAKERFNAVKQKRLQKFQAAFSHISEQIDPIYKELTKSPA 1093
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 29.5 bits (63), Expect = 0.41
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 293 TVKLRMIWRSIWSIIGTSRRLCKHWRVILISGSD*RKLMKKMLNLEKSQNSWTLSTTM*G 472
T L +I +W+I+G R +W++++ GS + + L + + QN TM
Sbjct: 163 TFILMLIILIVWAIVGGIYRAPDNWQIVMQDGSSIQCYVSDTLLMRQQQNQHIQVLTMIS 222
Query: 473 Q 475
Q
Sbjct: 223 Q 223
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 28.7 bits (61), Expect = 0.72
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 YHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVNHNVRTRLDEI-KRRELE 507
+ R K V +A+ S P+ E++EK+ + V GKI ++ V H V + L I KR+ E
Sbjct: 431 FKRDAKAVEEAMISWPE-SEKVEKSAQL-VAEGKIIVNVNGVEHTVESDLVTIEKRKHTE 488
Query: 508 RLR 516
+R
Sbjct: 489 HIR 491
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 299 KLRMIWRSIWSIIGT 343
++RM W SIWS++GT
Sbjct: 1207 RIRMEWSSIWSLLGT 1221
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 144 SNENCHYLHVDLVVLAKLTHQYEALS-YNRLYDRFP 248
S E CHYLH+ K+ EAL YNR P
Sbjct: 825 SVEYCHYLHLAAEEALKIGANQEALDLYNRCIKMIP 860
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 280 DKSEDSEIKDDLEEYMEYHRYLKEVVQALESDPDFRERLEKADEE 414
+ ++DS + EE Y K++ E DP+F + LE+ D++
Sbjct: 102 ENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQD 146
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.2 bits (55), Expect = 3.8
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = +1
Query: 280 DKSEDSEIKDDLEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVN 459
D+SE + +K L +Y + +K LE E++++ + E E L+ +
Sbjct: 843 DESELNSVKRSLLKYENKLQIIKSSSSGLE------EQMQRINSEISDKRNELESLEELQ 896
Query: 460 HNVRTRLDE---IKRRELERLRHLATKQFELTNDLHVNMGKVPSSEHLDHTN 606
H V TR+++ I R + L ++ E N+ ++G +P + + +
Sbjct: 897 HEVATRIEQDAKINERNAAKRSLLLARKKE-CNEKIKSLGVLPEEAFIKYVS 947
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 6.7
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Frame = +1
Query: 274 TPDKSEDSEIKDDLEEYMEYHRYLKEVVQALESDPD-------FRERLEKA---DEEDVK 423
TP S + K +L++ + + ++ E D + + + L+K+ D+ D
Sbjct: 351 TPPASTSNSNKKNLDKLKKMRKLCSRSLEPYELDSNTQRKRKRYEDSLKKSKTLDKVDSL 410
Query: 424 SGKIAEQLDFVNHNVRTRLDEIKRRELERLRHL 522
+ K+A++LD N +++++KR + E L +
Sbjct: 411 NRKMAKELDRKNSKELQKINKVKRTKEECLSEI 443
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 90 YIITGQQNSTYSKIIQSISNEN 155
Y + NSTY+ +QSI+NE+
Sbjct: 184 YSLPSNSNSTYTTPLQSINNEH 205
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 171 HVSNDSFRLILIVLFLNRC 115
+++ND FRL LIV+ L C
Sbjct: 789 NINNDMFRLRLIVVVLQTC 807
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 292 DSEIKDDLEEYMEYHRYLKEVVQALESD 375
DSE+KD LE+ +H K+++ ++ D
Sbjct: 126 DSEVKDKLEKLSIHHPLKKDLLAFIQLD 153
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 256 SYAPPVTPDKSEDSEIKDDLEEYMEY 333
SY P + D +++ +I D LEE +Y
Sbjct: 313 SYDPNLISDTNDEDDIADFLEEMSDY 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,786
Number of Sequences: 5004
Number of extensions: 44783
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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