BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f04 (621 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 29 0.028 AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 29 0.028 AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 3.2 AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 4.2 DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 21 7.3 DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 7.3 DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 7.3 DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 7.3 DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 7.3 DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 21 7.3 DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 21 7.3 AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 7.3 AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 7.3 DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 9.7 DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 9.7 DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 9.7 DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 9.7 DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 9.7 DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 9.7 >AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-activated ion channelvariant L protein. Length = 664 Score = 29.5 bits (63), Expect = 0.028 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Frame = +1 Query: 313 LEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQL--DFVNHNVRT 474 +EEYM Y + +E+ Q + + R + + DEE + G+++E+L D +N+N R+ Sbjct: 395 VEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELI-LGELSEKLREDVINYNCRS 449 >AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-activated ion channel protein. Length = 632 Score = 29.5 bits (63), Expect = 0.028 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Frame = +1 Query: 313 LEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQL--DFVNHNVRT 474 +EEYM Y + +E+ Q + + R + + DEE + G+++E+L D +N+N R+ Sbjct: 363 VEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELI-LGELSEKLREDVINYNCRS 417 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 22.6 bits (46), Expect = 3.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 460 HNVRTRLDEIKRRELERLRHLATKQFELTNDL 555 H R+ E+K E ERL HL ++ L N+L Sbjct: 848 HLEDNRIRELKGFEFERLSHL--RELYLQNNL 877 >AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex determiner protein. Length = 407 Score = 22.2 bits (45), Expect = 4.2 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 105 QQNSTYSKIIQSISNENCH 161 ++ S SKII S+SN+ H Sbjct: 306 RERSKESKIISSLSNKTIH 324 >DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex determiner protein. Length = 189 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 71 TERERSREPKIISSLSNKTIH 91 >DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 71 TERERSREPKIISSLSNKTIH 91 >DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 71 TERERSREPKIISSLSNKTIH 91 >DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 71 TERERSREPKIISSLSNKTIH 91 >DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 71 TERERSREPKIISSLSNKTIH 91 >DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 71 TERERSREPKIISSLSNKTIH 91 >DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex determiner protein. Length = 191 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 71 TERERSREPKIISSLSNKTIH 91 >AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex determiner protein. Length = 426 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 304 TERERSREPKIISSLSNKTIH 324 >AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex determiner protein. Length = 428 Score = 21.4 bits (43), Expect = 7.3 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN+ H Sbjct: 304 TERERSREPKIISSLSNKTIH 324 >DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 21.0 bits (42), Expect = 9.7 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN H Sbjct: 70 TERERSREPKIISSLSNNTIH 90 >DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.0 bits (42), Expect = 9.7 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN H Sbjct: 71 TERERSREPKIISSLSNNTIH 91 >DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.0 bits (42), Expect = 9.7 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN H Sbjct: 71 TERERSREPKIISSLSNNTIH 91 >DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.0 bits (42), Expect = 9.7 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN H Sbjct: 71 TERERSREPKIISSLSNNTIH 91 >DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 21.0 bits (42), Expect = 9.7 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN H Sbjct: 71 TERERSREPKIISSLSNNTIH 91 >DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex determiner protein. Length = 186 Score = 21.0 bits (42), Expect = 9.7 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 99 TGQQNSTYSKIIQSISNENCH 161 T ++ S KII S+SN H Sbjct: 71 TERERSREPKIISSLSNRTIH 91 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 156,398 Number of Sequences: 438 Number of extensions: 3347 Number of successful extensions: 19 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 19 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 18460203 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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