Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f04
(621 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 29 0.028
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 29 0.028
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 3.2
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 4.2
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 21 7.3
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 7.3
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 7.3
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 7.3
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 7.3
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 21 7.3
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 21 7.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 7.3
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 7.3
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 9.7
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 9.7
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 9.7
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 9.7
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 9.7
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 9.7
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 29.5 bits (63), Expect = 0.028
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 313 LEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQL--DFVNHNVRT 474
+EEYM Y + +E+ Q + + R + + DEE + G+++E+L D +N+N R+
Sbjct: 395 VEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELI-LGELSEKLREDVINYNCRS 449
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 29.5 bits (63), Expect = 0.028
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 313 LEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQL--DFVNHNVRT 474
+EEYM Y + +E+ Q + + R + + DEE + G+++E+L D +N+N R+
Sbjct: 363 VEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELI-LGELSEKLREDVINYNCRS 417
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.6 bits (46), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 460 HNVRTRLDEIKRRELERLRHLATKQFELTNDL 555
H R+ E+K E ERL HL ++ L N+L
Sbjct: 848 HLEDNRIRELKGFEFERLSHL--RELYLQNNL 877
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 105 QQNSTYSKIIQSISNENCH 161
++ S SKII S+SN+ H
Sbjct: 306 RERSKESKIISSLSNKTIH 324
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 71 TERERSREPKIISSLSNKTIH 91
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 71 TERERSREPKIISSLSNKTIH 91
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 71 TERERSREPKIISSLSNKTIH 91
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 71 TERERSREPKIISSLSNKTIH 91
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 71 TERERSREPKIISSLSNKTIH 91
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 71 TERERSREPKIISSLSNKTIH 91
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 71 TERERSREPKIISSLSNKTIH 91
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 304 TERERSREPKIISSLSNKTIH 324
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN+ H
Sbjct: 304 TERERSREPKIISSLSNKTIH 324
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN H
Sbjct: 70 TERERSREPKIISSLSNNTIH 90
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN H
Sbjct: 71 TERERSREPKIISSLSNNTIH 91
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN H
Sbjct: 71 TERERSREPKIISSLSNNTIH 91
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN H
Sbjct: 71 TERERSREPKIISSLSNNTIH 91
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN H
Sbjct: 71 TERERSREPKIISSLSNNTIH 91
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 99 TGQQNSTYSKIIQSISNENCH 161
T ++ S KII S+SN H
Sbjct: 71 TERERSREPKIISSLSNRTIH 91
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,398
Number of Sequences: 438
Number of extensions: 3347
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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