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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f04
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    29   0.028
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    29   0.028
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.7  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 29.5 bits (63), Expect = 0.028
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = +1

Query: 313 LEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQL--DFVNHNVRT 474
           +EEYM Y +  +E+ Q +    + R + +  DEE +  G+++E+L  D +N+N R+
Sbjct: 395 VEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELI-LGELSEKLREDVINYNCRS 449


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 29.5 bits (63), Expect = 0.028
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = +1

Query: 313 LEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQL--DFVNHNVRT 474
           +EEYM Y +  +E+ Q +    + R + +  DEE +  G+++E+L  D +N+N R+
Sbjct: 363 VEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELI-LGELSEKLREDVINYNCRS 417


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 460 HNVRTRLDEIKRRELERLRHLATKQFELTNDL 555
           H    R+ E+K  E ERL HL  ++  L N+L
Sbjct: 848 HLEDNRIRELKGFEFERLSHL--RELYLQNNL 877


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 105 QQNSTYSKIIQSISNENCH 161
           ++ S  SKII S+SN+  H
Sbjct: 306 RERSKESKIISSLSNKTIH 324


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 71  TERERSREPKIISSLSNKTIH 91


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 71  TERERSREPKIISSLSNKTIH 91


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 71  TERERSREPKIISSLSNKTIH 91


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 71  TERERSREPKIISSLSNKTIH 91


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 71  TERERSREPKIISSLSNKTIH 91


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 71  TERERSREPKIISSLSNKTIH 91


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 71  TERERSREPKIISSLSNKTIH 91


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 304 TERERSREPKIISSLSNKTIH 324


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN+  H
Sbjct: 304 TERERSREPKIISSLSNKTIH 324


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN   H
Sbjct: 70  TERERSREPKIISSLSNNTIH 90


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN   H
Sbjct: 71  TERERSREPKIISSLSNNTIH 91


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN   H
Sbjct: 71  TERERSREPKIISSLSNNTIH 91


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN   H
Sbjct: 71  TERERSREPKIISSLSNNTIH 91


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN   H
Sbjct: 71  TERERSREPKIISSLSNNTIH 91


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  TGQQNSTYSKIIQSISNENCH 161
           T ++ S   KII S+SN   H
Sbjct: 71  TERERSREPKIISSLSNRTIH 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,398
Number of Sequences: 438
Number of extensions: 3347
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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