Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f03
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   2.3  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   4.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   4.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   9.1  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   9.1  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 197 ITQIIILRVWFLLHDVIPSPWKSIVNI 117
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 YHHPAYFRREAVMRFGS 287
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 49  KRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRNIIICVITGGRTSC 219
           +RC+ + I   G+ F N I +   F+   HG+GI     + +R+++  +      SC
Sbjct: 219 RRCSKINI--TGSVFDNFIPS--FFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSC 271


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 58   TGVRIPQAGTNFSNEIRTQQMF 123
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 418 GRAHSPPGVKWLLEPIDIYN 359
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 40  FVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 144
           FVL  C G    + G  ++++IR+     + F+GE
Sbjct: 21  FVLFLCYGKSSRELGVKWNSDIRSWMTSYVGFNGE 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,624
Number of Sequences: 5004
Number of extensions: 38953
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)