Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f03
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    34   0.045
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20...    31   0.55 
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    29   1.3  
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021...    28   2.9  
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332     27   5.1  
01_06_1749 - 39636951-39638102                                         27   9.0  
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466...    27   9.0  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 34.3 bits (75), Expect = 0.045
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 1   KSRRGLK--DKTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 144
           K RR +    K  G  ++ RCTGV I   G N   +I T      DFHGE
Sbjct: 140 KERRRIAKLSKKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>01_01_0026 +
           201042-201110,201252-201359,202511-202639,203164-203440,
           203543-203647,203730-203875,204042-204149,204290-204378,
           204552-205098
          Length = 525

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 116 C*VRISLE--KLVPACGIRTPVHRFNTNAPDVLSFR 15
           C V+ SL+   + PACG + P H  + + P +L+FR
Sbjct: 335 CLVKDSLQFGSIAPACGAKDPHHLDSLSEPQILTFR 370


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 79  AGTNFSNEIRTQQMFTIDFHGEGITSC-NKNQTRNIIICVITGGRTSCESARVGTTTPPI 255
           +GT+   +    ++  +D  G GIT+C  +N+ +     ++ G      + RV   T  +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 256 SAV 264
           +AV
Sbjct: 89  NAV 91


>03_06_0583 +
           34901636-34901721,34901805-34901902,34902029-34902167,
           34902262-34902290,34902406-34902502,34902593-34902648,
           34902759-34902866,34902988-34903044,34905585-34905679,
           34905822-34905998,34906086-34906189,34906595-34906664,
           34906774-34906833
          Length = 391

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82  PPAGFEHRCIASTRMHRTSYP 20
           PP G +H CI + R H TS P
Sbjct: 304 PPTGDQHACIQALRDHWTSIP 324


>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
          Length = 190

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 293 WGSRCNYTETLELISRGGWRIYVVDVYGLQ 382
           W     Y++T EL+ R GW+ + VD  G+Q
Sbjct: 72  WSIGVAYSDTGELVLRSGWKEF-VDANGVQ 100


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 316 SIVTTATPPFEPKRITA 266
           S+ + A PPF+P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>01_06_1141 +
           34845834-34845931,34846110-34846198,34846535-34846686,
           34847473-34847583,34847702-34847818,34847989-34848156,
           34848563-34848703
          Length = 291

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 302 GYPTLRTETHYCFTAEIGGVVVPTR-ADSQEVLPPVITQI 186
           GY  L   TH    AE+   V+ TR A +QE+L  ++  +
Sbjct: 206 GYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPV 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,385
Number of Sequences: 37544
Number of extensions: 282245
Number of successful extensions: 561
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)