Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f03
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   4.0  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               27   5.3  
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)               27   9.2  

>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 21/79 (26%), Positives = 32/79 (40%)
 Frame = +1

Query: 22   DKTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRNIIICVIT 201
            D+T+ A + K  T   I   GT  +  I T     +       T+ + +        +IT
Sbjct: 1003 DETTSASMTKHATAAPITTNGTT-AEPISTDGTTVLSMSTARTTTASMSTAGTTAAPIIT 1061

Query: 202  GGRTSCESARVGTTTPPIS 258
             G T+      GTTT P+S
Sbjct: 1062 NGTTAAPITTNGTTTEPMS 1080


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +1

Query: 43  VLKRCTGVRIPQAGTNFSNEIRTQQMFTID---FHGEGITSCNKNQTRNIIICVITGGRT 213
           VL+ C   RI  +  N  N      +F+     ++G  +  C+   + N   CV  GG+ 
Sbjct: 699 VLQDCVNSRIAMSRINTENPQCRALVFSASTELYNGTKVCECDPEGSTNPTQCVAYGGQC 758

Query: 214 SCESARVG 237
            C+    G
Sbjct: 759 PCKPGVAG 766


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 151 TSCNKNQTRNIIICVITGGRTSCESAR 231
           T+C+K + R   IC + GGR  C   R
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR 128


>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
          Length = 501

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 136 HGEGITSCNKNQTRNIIICVITGGRTSCESARVGTTTPPISAVKQ*CVSVRR 291
           HG+G   C +   RN+ IC +        +A+    T P  A+   C +  R
Sbjct: 266 HGDGDAGCPRKLPRNLSICPVLCQPRESRTAQTEPKTRPKLALPAQCPATCR 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,510
Number of Sequences: 59808
Number of extensions: 317947
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)