BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f03 (443 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43 SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 4.0 SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 27 5.3 SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38) 27 9.2 >SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2317 Score = 31.1 bits (67), Expect = 0.43 Identities = 21/79 (26%), Positives = 32/79 (40%) Frame = +1 Query: 22 DKTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRNIIICVIT 201 D+T+ A + K T I GT + I T + T+ + + +IT Sbjct: 1003 DETTSASMTKHATAAPITTNGTT-AEPISTDGTTVLSMSTARTTTASMSTAGTTAAPIIT 1061 Query: 202 GGRTSCESARVGTTTPPIS 258 G T+ GTTT P+S Sbjct: 1062 NGTTAAPITTNGTTTEPMS 1080 >SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) Length = 1706 Score = 27.9 bits (59), Expect = 4.0 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Frame = +1 Query: 43 VLKRCTGVRIPQAGTNFSNEIRTQQMFTID---FHGEGITSCNKNQTRNIIICVITGGRT 213 VL+ C RI + N N +F+ ++G + C+ + N CV GG+ Sbjct: 699 VLQDCVNSRIAMSRINTENPQCRALVFSASTELYNGTKVCECDPEGSTNPTQCVAYGGQC 758 Query: 214 SCESARVG 237 C+ G Sbjct: 759 PCKPGVAG 766 >SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) Length = 173 Score = 27.5 bits (58), Expect = 5.3 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 151 TSCNKNQTRNIIICVITGGRTSCESAR 231 T+C+K + R IC + GGR C R Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR 128 >SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38) Length = 501 Score = 26.6 bits (56), Expect = 9.2 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = +1 Query: 136 HGEGITSCNKNQTRNIIICVITGGRTSCESARVGTTTPPISAVKQ*CVSVRR 291 HG+G C + RN+ IC + +A+ T P A+ C + R Sbjct: 266 HGDGDAGCPRKLPRNLSICPVLCQPRESRTAQTEPKTRPKLALPAQCPATCR 317 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,224,510 Number of Sequences: 59808 Number of extensions: 317947 Number of successful extensions: 634 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 633 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 871599479 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -