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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f02
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...   192   5e-50
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...   101   9e-23
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    29   0.56 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   4.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.2  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    25   6.9  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   6.9  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   6.9  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   9.1  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   9.1  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   9.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   9.1  

>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score =  192 bits (467), Expect = 5e-50
 Identities = 97/175 (55%), Positives = 128/175 (73%), Gaps = 8/175 (4%)
 Frame = +2

Query: 134 MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQI 313
           +N    IR L + V+N+IAAGEI++RP NA+KELIENSLDA ST+I + +K GGLK LQI
Sbjct: 3   VNSRAKIRPLDQLVINKIAAGEIIERPENAIKELIENSLDAGSTSIDVLLKDGGLKLLQI 62

Query: 314 QDNGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQ 493
            DNG+GI+ +DL  +C+RF+TSK+  + DLQ + T+GFRGEALASISH+A +T++TK + 
Sbjct: 63  TDNGSGIQYDDLPYLCQRFSTSKIDNFNDLQHLQTFGFRGEALASISHVAKVTVVTKLSS 122

Query: 494 DKCAYKASYENGKLKGPI--------KACAGNNGTQITVEDLFYNVVARKGALRS 634
           D  A+KA Y +G L  PI        + CAG  GT IT EDLFYNV +RK AL++
Sbjct: 123 DIHAWKAFYVDGAL-APISPGMSPAPQPCAGKQGTVITAEDLFYNVRSRKSALKN 176


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score =  101 bits (242), Expect = 9e-23
 Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
 Frame = +2

Query: 152 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 331
           ++ +    V++I +G+++   A+A+KEL+ENSLD+ +T I I  K+ G+  +++ DNG+G
Sbjct: 4   VKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGSG 63

Query: 332 IRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQD--KCA 505
           I   D + + ++  TSK+  +EDL+ + T+GFRGEAL+S+  +  + I T T  +  K  
Sbjct: 64  IDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTATQNEAPKGV 123

Query: 506 YKASYENGKLKGPIKACAGNNGTQITVEDLFYNVVARKGAL 628
                  G LK  +       GT + V DLF  +  R+  L
Sbjct: 124 QLNLDHEGSLKDKL-TIPFQRGTSVMVNDLFCTLPVRRKLL 163


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 152 IRKLSEEVVNRIA-AGEIVQRPANALKELIENSLDAKSTNIIITVK 286
           I KLSE+  N  A   E   R    LK+L+EN L+    N+I T+K
Sbjct: 261 IDKLSEQSGNVTADTNEHYDRAMQYLKQLVENILNRSLDNLIDTLK 306


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 267 LVDLASKLFS-ISSFNALAGLCTISPAAIRFTTSSLSFRIIPGSFIY 130
           L+ L +K  +  SSFN +  +CTI    I    SS S     GS+I+
Sbjct: 187 LIVLPTKFLARFSSFNVVFQICTILIFIISLAASSTSETRNTGSYIF 233


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 215  ANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRNEDLDIVC 361
            ANA  E I ++L+A S    I    GGL + ++ + G  + +    ++C
Sbjct: 1323 ANATDEEIWHALEAASLKQFIQTLDGGL-YSRVTEGGANLSSGQRQLMC 1370


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 179 NRIAAGEIVQRPANALKELIENSLDAKSTNIIITV 283
           +RI   E++Q P   L ++I    + KST +II V
Sbjct: 99  SRIRPKELLQEPQTTLPDIISTVNNDKSTCLIIQV 133


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 164 SEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGG 295
           S E  NR  A E+V+    A + LI    DAKS   ++ V   G
Sbjct: 208 SGECKNRKYAEEVVRECNEAWERLITGKTDAKSDFSLVNVSVTG 251


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 324 GQV*EMKT*ISYVRDSQHLNSENMRTYKKSVPTDFVERLSRVSVILHTLQ 473
           GQ+ + K     +RD+Q    E +R Y++ + T+  +RLS +   L  L+
Sbjct: 806 GQLQDAKNEEHRIRDNQRPVIEEIRIYREKIQTE-TQRLSSLQTELSRLR 854


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 140 EPGIIRKLSEEVVNRIAAGEIVQRPANALKEL 235
           EP ++RK+++E V    A E+V    NA++E+
Sbjct: 395 EP-LVRKIADEFVTSGVANEVVCAGINAIREV 425


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 39  FMSNNYKNIVNFQIDGPKRKV*PKFNKFQP 128
           F+S  Y+N+ NF +      +  KF+K +P
Sbjct: 37  FLSKIYENVSNFNVPRKLHDIEHKFSKEEP 66


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 26/118 (22%), Positives = 50/118 (42%)
 Frame = +2

Query: 119 ISAL*MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGL 298
           I+ L M +   ++ L EE+ N   A ++  +  +  +E +  SL    TN+    +    
Sbjct: 597 ITFLSMKQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEK 656

Query: 299 KFLQIQDNGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLT 472
              ++ DN   +   DL I  + +T S  ++ E+  ++   G   E    I   + LT
Sbjct: 657 YHEELLDNQQKL--YDLRIELD-YTKSNCKQMEEEMQVLREGHESEIKDFIEEHSKLT 711


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 296  LKFLQIQDNGTGIRNEDLDIVCERFTTSKLRK 391
            ++ ++   N +G  N+    VCERF  S LRK
Sbjct: 923  IELVEAYINKSGDINDLFGAVCERFPDSDLRK 954


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -1

Query: 620 LYVPQRYKINLQRLSECRCCQHKLLWGLSVFHFHMRLCKHICLVQF 483
           +Y  Q  K+N Q+      C H  ++G ++     +L KH   + +
Sbjct: 850 IYQEQLDKLNFQKYLNESKCSHSPIYGSNLIRLAEKLPKHSTSIDY 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,298
Number of Sequences: 5004
Number of extensions: 51937
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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