BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f02 (635 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 192 5e-50 SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 101 9e-23 SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 29 0.56 SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 4.0 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.2 SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.2 SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 25 6.9 SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 6.9 SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 6.9 SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 9.1 SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.1 SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 9.1 SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.1 >SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 684 Score = 192 bits (467), Expect = 5e-50 Identities = 97/175 (55%), Positives = 128/175 (73%), Gaps = 8/175 (4%) Frame = +2 Query: 134 MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQI 313 +N IR L + V+N+IAAGEI++RP NA+KELIENSLDA ST+I + +K GGLK LQI Sbjct: 3 VNSRAKIRPLDQLVINKIAAGEIIERPENAIKELIENSLDAGSTSIDVLLKDGGLKLLQI 62 Query: 314 QDNGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQ 493 DNG+GI+ +DL +C+RF+TSK+ + DLQ + T+GFRGEALASISH+A +T++TK + Sbjct: 63 TDNGSGIQYDDLPYLCQRFSTSKIDNFNDLQHLQTFGFRGEALASISHVAKVTVVTKLSS 122 Query: 494 DKCAYKASYENGKLKGPI--------KACAGNNGTQITVEDLFYNVVARKGALRS 634 D A+KA Y +G L PI + CAG GT IT EDLFYNV +RK AL++ Sbjct: 123 DIHAWKAFYVDGAL-APISPGMSPAPQPCAGKQGTVITAEDLFYNVRSRKSALKN 176 >SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Schizosaccharomyces pombe|chr 1|||Manual Length = 794 Score = 101 bits (242), Expect = 9e-23 Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Frame = +2 Query: 152 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 331 ++ + V++I +G+++ A+A+KEL+ENSLD+ +T I I K+ G+ +++ DNG+G Sbjct: 4 VKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGSG 63 Query: 332 IRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQD--KCA 505 I D + + ++ TSK+ +EDL+ + T+GFRGEAL+S+ + + I T T + K Sbjct: 64 IDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTATQNEAPKGV 123 Query: 506 YKASYENGKLKGPIKACAGNNGTQITVEDLFYNVVARKGAL 628 G LK + GT + V DLF + R+ L Sbjct: 124 QLNLDHEGSLKDKL-TIPFQRGTSVMVNDLFCTLPVRRKLL 163 >SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 851 Score = 29.1 bits (62), Expect = 0.56 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +2 Query: 152 IRKLSEEVVNRIA-AGEIVQRPANALKELIENSLDAKSTNIIITVK 286 I KLSE+ N A E R LK+L+EN L+ N+I T+K Sbjct: 261 IDKLSEQSGNVTADTNEHYDRAMQYLKQLVENILNRSLDNLIDTLK 306 >SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 543 Score = 26.2 bits (55), Expect = 4.0 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -3 Query: 267 LVDLASKLFS-ISSFNALAGLCTISPAAIRFTTSSLSFRIIPGSFIY 130 L+ L +K + SSFN + +CTI I SS S GS+I+ Sbjct: 187 LIVLPTKFLARFSSFNVVFQICTILIFIISLAASSTSETRNTGSYIF 233 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.8 bits (54), Expect = 5.2 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +2 Query: 215 ANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRNEDLDIVC 361 ANA E I ++L+A S I GGL + ++ + G + + ++C Sbjct: 1323 ANATDEEIWHALEAASLKQFIQTLDGGL-YSRVTEGGANLSSGQRQLMC 1370 >SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 491 Score = 25.8 bits (54), Expect = 5.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +2 Query: 179 NRIAAGEIVQRPANALKELIENSLDAKSTNIIITV 283 +RI E++Q P L ++I + KST +II V Sbjct: 99 SRIRPKELLQEPQTTLPDIISTVNNDKSTCLIIQV 133 >SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 289 Score = 25.4 bits (53), Expect = 6.9 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +2 Query: 164 SEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGG 295 S E NR A E+V+ A + LI DAKS ++ V G Sbjct: 208 SGECKNRKYAEEVVRECNEAWERLITGKTDAKSDFSLVNVSVTG 251 >SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual Length = 1140 Score = 25.4 bits (53), Expect = 6.9 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = +3 Query: 324 GQV*EMKT*ISYVRDSQHLNSENMRTYKKSVPTDFVERLSRVSVILHTLQ 473 GQ+ + K +RD+Q E +R Y++ + T+ +RLS + L L+ Sbjct: 806 GQLQDAKNEEHRIRDNQRPVIEEIRIYREKIQTE-TQRLSSLQTELSRLR 854 >SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 719 Score = 25.4 bits (53), Expect = 6.9 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = +2 Query: 140 EPGIIRKLSEEVVNRIAAGEIVQRPANALKEL 235 EP ++RK+++E V A E+V NA++E+ Sbjct: 395 EP-LVRKIADEFVTSGVANEVVCAGINAIREV 425 >SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces pombe|chr 1|||Manual Length = 473 Score = 25.0 bits (52), Expect = 9.1 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +3 Query: 39 FMSNNYKNIVNFQIDGPKRKV*PKFNKFQP 128 F+S Y+N+ NF + + KF+K +P Sbjct: 37 FLSKIYENVSNFNVPRKLHDIEHKFSKEEP 66 >SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1044 Score = 25.0 bits (52), Expect = 9.1 Identities = 26/118 (22%), Positives = 50/118 (42%) Frame = +2 Query: 119 ISAL*MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGL 298 I+ L M + ++ L EE+ N A ++ + + +E + SL TN+ + Sbjct: 597 ITFLSMKQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEK 656 Query: 299 KFLQIQDNGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLT 472 ++ DN + DL I + +T S ++ E+ ++ G E I + LT Sbjct: 657 YHEELLDNQQKL--YDLRIELD-YTKSNCKQMEEEMQVLREGHESEIKDFIEEHSKLT 711 >SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1108 Score = 25.0 bits (52), Expect = 9.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 296 LKFLQIQDNGTGIRNEDLDIVCERFTTSKLRK 391 ++ ++ N +G N+ VCERF S LRK Sbjct: 923 IELVEAYINKSGDINDLFGAVCERFPDSDLRK 954 >SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1288 Score = 25.0 bits (52), Expect = 9.1 Identities = 11/46 (23%), Positives = 21/46 (45%) Frame = -1 Query: 620 LYVPQRYKINLQRLSECRCCQHKLLWGLSVFHFHMRLCKHICLVQF 483 +Y Q K+N Q+ C H ++G ++ +L KH + + Sbjct: 850 IYQEQLDKLNFQKYLNESKCSHSPIYGSNLIRLAEKLPKHSTSIDY 895 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,577,298 Number of Sequences: 5004 Number of extensions: 51937 Number of successful extensions: 166 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 165 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 283719918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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