Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f02
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 252 2e-67
SB_31218| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_16684| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_49216| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_23452| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_15636| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 29 3.2
SB_42961| Best HMM Match : DNA_mis_repair (HMM E-Value=1.8e-19) 29 4.2
SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_6051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 252 bits (616), Expect = 2e-67
Identities = 125/168 (74%), Positives = 137/168 (81%), Gaps = 7/168 (4%)
Frame = +2
Query: 152 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 331
IRKL E VVNRIAAGE++QRPANALKE+IEN LDAKST+I +TVKSGGLK LQIQDNG G
Sbjct: 7 IRKLDETVVNRIAAGEVIQRPANALKEMIENCLDAKSTSITVTVKSGGLKLLQIQDNGCG 66
Query: 332 IRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDKCAYK 511
IR ED+ IVCERFTTSKL K+EDL ISTYGFRGEALASISH+AH+TI TKTA CAYK
Sbjct: 67 IRKEDMHIVCERFTTSKLSKFEDLSSISTYGFRGEALASISHVAHVTITTKTAHSSCAYK 126
Query: 512 ASYENGKLKGP-------IKACAGNNGTQITVEDLFYNVVARKGALRS 634
ASY +GKL P K CAGN GTQITVEDLFYNV R+ AL+S
Sbjct: 127 ASYSDGKLVPPRPGLPAEPKPCAGNKGTQITVEDLFYNVATRRKALKS 174
>SB_31218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 113 bits (271), Expect = 1e-25
Identities = 55/153 (35%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Frame = +2
Query: 161 LSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRN 340
+ + V++I +G++V A A+KEL+ENSLDA +T++ + +K G +++ DNG G+
Sbjct: 19 IDRKSVHQICSGQVVLSLATAMKELLENSLDAGATSVDVRLKEHGSHSIEVSDNGAGVEP 78
Query: 341 EDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDKCAYKASY 520
++ + + + TSKL+ + DL + T+G+RGEAL+S+ ++ L+I T+ K Y
Sbjct: 79 QNFEALTLKHYTSKLKDFSDLSAVETFGYRGEALSSLCALSDLSITTRHISQTAGTKLDY 138
Query: 521 E-NGKLKGPIKACAGNNGTQITVEDLFYNVVAR 616
+ NGKLK + CA GT +TV +LF + R
Sbjct: 139 DHNGKLKSKL-PCAREQGTMVTVLNLFSTLPVR 170
>SB_16684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/97 (38%), Positives = 66/97 (68%)
Frame = +2
Query: 161 LSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRN 340
+ + V++I +G++V A A+KEL+ENSLDA +T++ + +K G +++ DNG G+
Sbjct: 19 IDSKSVHQICSGQVVLNLATAMKELLENSLDAGATSVDVRLKEHGSHSIEVSDNGAGVEP 78
Query: 341 EDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASI 451
++ + + + TSKL+ + DL + T+GFRGEAL+S+
Sbjct: 79 QNFEALTLKHYTSKLKDFSDLSAVETFGFRGEALSSL 115
>SB_49216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 773
Score = 81.8 bits (193), Expect = 4e-16
Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Frame = +2
Query: 149 IIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGT 328
+IR L + + + +G + A+ EL+ N+LDA ++ I + V + +Q+ DNG+
Sbjct: 1 MIRHLDTGIRSHLRSGVAISTLTQAIDELVTNALDAGASCINVHVDIPSFR-VQVSDNGS 59
Query: 329 GIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAH-LTILTKTAQDKCA 505
GI ++L+I+ +R+ TSK DL+++S+YGFRGEALASI I L I+TK + +
Sbjct: 60 GITKDNLEILGQRYCTSKCHSLSDLRKLSSYGFRGEALASIRDICGVLEIVTKHSS---S 116
Query: 506 YKASY 520
YK Y
Sbjct: 117 YKTYY 121
>SB_23452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/37 (40%), Positives = 29/37 (78%)
Frame = +2
Query: 161 LSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNI 271
L ++ V+RIA+ +++ ++A+KEL+EN+LDA + +I
Sbjct: 7 LPQDTVHRIASSQVITSVSSAVKELLENALDAGANSI 43
>SB_15636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/90 (22%), Positives = 43/90 (47%)
Frame = +2
Query: 158 KLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIR 337
K+ E V ++A G+I Q + E+ + T I++ + LQ++ + I
Sbjct: 189 KMESEKVQKMATGDIQQHISELSAEVTRKGDLKEITEKIVSA----IASLQVE---SPII 241
Query: 338 NEDLDIVCERFTTSKLRKYEDLQEISTYGF 427
++ +CE++TT ++ E L+ + + F
Sbjct: 242 THFIECLCEKYTTGEMALIEPLENLEEHDF 271
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -3
Query: 396 SYFLSLDVVNLSHTISKSSFLIPVPLSCICKNFKPPDF-TVIMMLVDLASKLFSISSFNA 220
S FLSL L+ + S S FL +P + + P DF T L D + S+S F
Sbjct: 695 SDFLSLPSDFLTSSSSLSDFLTSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSSSLSDF-- 752
Query: 219 LAGLCTISPAAIRFTTSSL 163
L + S ++ +T+SSL
Sbjct: 753 ---LTSSSSLSVFYTSSSL 768
>SB_42961| Best HMM Match : DNA_mis_repair (HMM E-Value=1.8e-19)
Length = 727
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 509 KASYE-NGKLKGPIKACAGNNGTQITVEDLFYNVVAR 616
K Y+ NGKLK + CA GT +TV +LF + R
Sbjct: 5 KLDYDHNGKLKSKLP-CAREQGTMVTVLNLFSTLPVR 40
>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 514 GFVSTFVLCSFCQYCKVCNMTDTRE 440
GF+ FVLCS C+ + + DTR+
Sbjct: 92 GFIERFVLCSSCENPETVLVVDTRK 116
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 351 ISYVRDSQHLNSENMRTYKKSVPTDFVERLSRVSVILH 464
ISY S L++ T+ ++VP+D + + V +I+H
Sbjct: 1191 ISYGASSAELSNSQFSTFFRTVPSDNFQSHAMVDIIMH 1228
>SB_6051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = -3
Query: 300 FKPPDFTVIMMLVDLASKLFSISSFNALAGLCTISPAAIRFTTSSLSFR 154
FK FT ML D K ++S +AL L T+S A+ +FTT S +FR
Sbjct: 9 FKARKFT---MLSDALRKFTTLS--DALRKLTTLSDASRKFTTLSDAFR 52
>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 225 NALAGL-CTISPAAIRFTTSSLSF 157
NA G+ CTI+PAAI T S+L+F
Sbjct: 182 NAKTGIICTITPAAIDETASTLNF 205
>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = +2
Query: 236 IENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRNEDLDIVCERFTTSKLRKYEDLQEIS 415
I ++ II T + K L + + I ++ +CE++TT ++ E L+ +
Sbjct: 659 IAEKIEGAKEEIISTSEKNTEKILSAIASQSPIITHFIECLCEKYTTGEMALIEPLENLE 718
Query: 416 TYGF 427
+ F
Sbjct: 719 EHDF 722
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,678,924
Number of Sequences: 59808
Number of extensions: 367007
Number of successful extensions: 869
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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