Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f02
(635 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)... 198 3e-51
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s... 116 1e-26
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi... 90 1e-18
At3g01550.1 68416.m00085 triose phosphate/phosphate translocator... 32 0.37
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ... 30 1.5
At3g48150.1 68416.m05251 cell division cycle family protein / CD... 29 2.0
At1g14280.1 68414.m01693 phytochrome kinase, putative contains s... 29 3.4
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ... 28 6.0
At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to Deg... 28 6.0
>At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)
identical to MLH1 protein [Arabidopsis thaliana]
GI:3893081
Length = 737
Score = 198 bits (482), Expect = 3e-51
Identities = 93/165 (56%), Positives = 126/165 (76%)
Frame = +2
Query: 140 EPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQD 319
EP I++L E VVNRIAAGE++QRP +A+KEL+ENSLDA S++I + VK GGLK +Q+ D
Sbjct: 25 EPPKIQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSD 84
Query: 320 NGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDK 499
+G GIR EDL I+CER TTSKL K+EDL +S+ GFRGEALAS++++AH+T+ T T
Sbjct: 85 DGHGIRREDLPILCERHTTSKLTKFEDLFSLSSMGFRGEALASMTYVAHVTVTTITKGQI 144
Query: 500 CAYKASYENGKLKGPIKACAGNNGTQITVEDLFYNVVARKGALRS 634
Y+ SY +G ++ KACA GTQI VE+LFYN++AR+ L++
Sbjct: 145 HGYRVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQN 189
>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
similar to SP|P54278 PMS1 protein homolog 2 (DNA
mismatch repair protein PMS2) {Homo sapiens}; contains
Pfam profiles PF02518: ATPase, histidine kinase-, DNA
gyrase B-, and HSP90-like domain protein, PF01119: DNA
mismatch repair protein, C-terminal domain
Length = 923
Score = 116 bits (280), Expect = 1e-26
Identities = 58/156 (37%), Positives = 97/156 (62%)
Frame = +2
Query: 149 IIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGT 328
+IR ++ V++RI +G+++ ++A+KEL+ENSLDA +T+I I ++ G + Q+ DNG
Sbjct: 16 LIRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGC 75
Query: 329 GIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDKCAY 508
GI + ++ + TSKL + DL ++TYGFRGEAL+S+ + +LT+ T+T + A
Sbjct: 76 GISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTKNEPVAT 135
Query: 509 KASYENGKLKGPIKACAGNNGTQITVEDLFYNVVAR 616
++++ L K A GT +TV LF N+ R
Sbjct: 136 LLTFDHSGLLTAEKKTARQIGTTVTVRKLFSNLPVR 171
>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
protein homolog 3) {Homo sapiens}; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF01119: DNA mismatch
repair protein, C-terminal domain
Length = 1151
Score = 90.2 bits (214), Expect = 1e-18
Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Frame = +2
Query: 152 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 331
I+ L E V + + +G I+ A ++EL+ NSLDA +T + I V +++ D+G+G
Sbjct: 4 IKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFVGVVSCS-VKVVDDGSG 62
Query: 332 IRNEDLDIVCERFTTSKLRKYEDLQEIS-TYGFRGEALASISHIAHLTILTKTAQDKCAY 508
+ +DL ++ ER+ TSK + +++ S T+GFRGEALASIS I+ L + TK Y
Sbjct: 63 VSRDDLVLLGERYATSKFHDFTNVETASETFGFRGEALASISDISLLEVRTKAIGRPNGY 122
Query: 509 KASYENGK-LKGPIKACAGNNGTQITVEDLFYNVVARKGALRS 634
+ + K L I ++GT +TV DLFY+ R+ ++S
Sbjct: 123 RKVMKGSKCLHLGIDDDRKDSGTTVTVRDLFYSQPVRRKYMQS 165
>At3g01550.1 68416.m00085 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower]{Brassica
oleracea}
Length = 383
Score = 31.9 bits (69), Expect = 0.37
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 384 SLDVVNLSHTISKSSFLIPVPLSCICKNFK-PPDFTVIMMLVDLASKLFSISSFNALAGL 208
+LD +NL I+ SF++ VPL+ + FK P + L+ K F I S LAG+
Sbjct: 249 ALDNINLFSIITIISFILLVPLAILIDGFKVTPSHLQVATSQGLSVKEFCIMSL--LAGV 306
Query: 207 C 205
C
Sbjct: 307 C 307
>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 727
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 362 HIRYLSLHFLYLSHCPVSVR 303
H+R+LSLH ++SH P S+R
Sbjct: 486 HLRFLSLHRAWISHLPSSLR 505
>At3g48150.1 68416.m05251 cell division cycle family protein / CDC
family protein similar to cell division cycle protein 23
[Homo sapiens] GI:3283051, anaphase-promoting complex
subunit 8 [Homo sapiens] GI:6180017; contains Pfam
profile PF00515: TPR Domain
Length = 579
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 341 EDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILT-KTAQDKCAYKAS 517
+ ++I+ E + + ED+ S + EA A++S++AH LT K + C +
Sbjct: 288 DQVEIMFEELLRNDPYRVEDMDLYSNVLYAKEACAALSYLAHKVFLTDKYRPESCCIIGN 347
Query: 518 YENGKLKG 541
Y + LKG
Sbjct: 348 YYS--LKG 353
>At1g14280.1 68414.m01693 phytochrome kinase, putative contains
similarity to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 442
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 408 SCKSSYFLSLDVVNLSHTISKSSFLIPVPLSCICKNFKPPD 286
SC +SYF D+ + +K SFL + C+C N+ D
Sbjct: 156 SC-NSYFQEKDMSSNHKVSNKKSFLATLGCRCVCSNWSSVD 195
>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 901
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 362 HIRYLSLHFLYLSHCPVSVR 303
H+R+LSLH +SH P ++R
Sbjct: 594 HLRFLSLHQAVVSHLPSTIR 613
>At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to DegP2
protease GI:13172275 from [Arabidopsis thaliana];
identical to cDNA DegP2 protease (DEGP2) nuclear gene
for chloroplast product GI:13172274
Length = 607
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 293 GLKFL-QIQDNGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHL 469
GLK L + + + R E + I+ + YED+ F G + +I H+AHL
Sbjct: 465 GLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHL 524
Query: 470 TILTK 484
+ K
Sbjct: 525 IDMCK 529
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,505
Number of Sequences: 28952
Number of extensions: 256341
Number of successful extensions: 736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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