BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e24 (492 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 27 1.5 SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 1.5 SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 2.7 SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.5 SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 26 3.5 SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 26 3.5 SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 3.5 SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 26 3.5 SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 6.2 SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 6.2 >SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 455 Score = 27.1 bits (57), Expect = 1.5 Identities = 14/58 (24%), Positives = 31/58 (53%) Frame = +1 Query: 154 KEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPL 327 K+ KK+++ + + L K + + + + + D+D + N K G + S NP++P+ Sbjct: 354 KKEKKKKKVLSISLSGKKVVVDQKEASSESSDEDQDELDNLTKVEGQSHSH-NPKAPV 410 >SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit Bgs4|Schizosaccharomyces pombe|chr 3|||Manual Length = 1955 Score = 27.1 bits (57), Expect = 1.5 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 34 GQAYFSDLIVFREDICHFTILKNTLSNMVVKIYISGIS 147 G YF+DLI+F D + I+ NT+ + V++ ++ GIS Sbjct: 743 GIMYFTDLILFFLDTYLWYIIFNTIFS-VLRSFVLGIS 779 >SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation complex subunit Cdc45|Schizosaccharomyces pombe|chr 1|||Manual Length = 638 Score = 26.2 bits (55), Expect = 2.7 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 343 NDEEYCGDYDQFDLANEVDTLEQFLKL 423 N E YD +D ++VD+LE+ LKL Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481 >SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1502 Score = 25.8 bits (54), Expect = 3.5 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Frame = -2 Query: 293 PPEDLALFCMKSLSD--SLPGSVMSMTSYFIF 204 P +D+ C+K L SLPG + +YF+F Sbjct: 497 PYDDIRNLCLKILLSYKSLPGFISDSDAYFLF 528 >SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 217 Score = 25.8 bits (54), Expect = 3.5 Identities = 14/50 (28%), Positives = 21/50 (42%) Frame = +1 Query: 202 KNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDE 351 ++++YE I EP + K QN G + P P Q+ DE Sbjct: 133 ESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVESEPDHPFSQQLEQDE 182 >SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces pombe|chr 3|||Manual Length = 647 Score = 25.8 bits (54), Expect = 3.5 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 211 KYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPN 312 KY+ D E GR K+ +++ A S ++ DPN Sbjct: 522 KYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPN 555 >SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 875 Score = 25.8 bits (54), Expect = 3.5 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +1 Query: 235 EPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 354 E G + + +N+ + TVS +P LPP N+ E Sbjct: 442 EQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPE 481 >SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster type|Schizosaccharomyces pombe|chr 1|||Manual Length = 480 Score = 25.8 bits (54), Expect = 3.5 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +1 Query: 274 NAKSSGGTVSDPNPRSPLPPQMFNDEEY 357 NAK S G + PLPPQ FN +Y Sbjct: 394 NAKQSSGKLG------PLPPQSFNSSDY 415 >SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1583 Score = 25.0 bits (52), Expect = 6.2 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Frame = +1 Query: 235 EPGRESDKDFMQNNAKSSGGTVSDPN--PRSPLPPQMFNDEEYC 360 EP + D + N SS P+ PRSP ++FN + C Sbjct: 135 EPKEKPDASSINTNRSSSDNGFLTPSSSPRSPSCSRVFNAVQLC 178 >SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces pombe|chr 2|||Manual Length = 586 Score = 25.0 bits (52), Expect = 6.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 Query: 244 RESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 354 RES+ NNA++S T+ + +P +FNDEE Sbjct: 393 RESEATLGVNNAQTSRSTIPEEDP-------LFNDEE 422 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,746,629 Number of Sequences: 5004 Number of extensions: 34496 Number of successful extensions: 109 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 192109570 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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