Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e24
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33500.2 68415.m04107 zinc finger (B-box type) family protein       29   1.3  
At2g33500.1 68415.m04106 zinc finger (B-box type) family protein       29   1.3  
At3g27025.1 68416.m03381 expressed protein                             29   1.7  
At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small...    29   2.2  
At1g61850.1 68414.m06979 patatin family protein similar to membr...    28   3.0  
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    28   3.0  
At1g06030.1 68414.m00631 pfkB-type carbohydrate kinase family pr...    28   3.0  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    28   3.9  
At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family pr...    28   3.9  
At2g13450.1 68415.m01484 hypothetical protein similar to zinc fi...    27   6.9  
At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro...    27   6.9  
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK...    27   9.1  
At5g38420.1 68418.m04644 ribulose bisphosphate carboxylase small...    27   9.1  
At4g02000.1 68417.m00269 expressed protein low similarity to zin...    27   9.1  

>At2g33500.2 68415.m04107 zinc finger (B-box type) family protein
          Length = 401

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 199 SKNIKYEVIDITEPGR-ESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQ 375
           SK + +E +++ + G  E + + M     + GG++S P+P +     +   +  CG+  Q
Sbjct: 168 SKQVVFEQLELLKRGFVEGEGEIMVPEGINGGGSISQPSPTTSF-TSLLMSQSLCGNGMQ 226

Query: 376 FDLAN 390
           ++  N
Sbjct: 227 WNATN 231


>At2g33500.1 68415.m04106 zinc finger (B-box type) family protein
          Length = 402

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 199 SKNIKYEVIDITEPGR-ESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQ 375
           SK + +E +++ + G  E + + M     + GG++S P+P +     +   +  CG+  Q
Sbjct: 168 SKQVVFEQLELLKRGFVEGEGEIMVPEGINGGGSISQPSPTTSF-TSLLMSQSLCGNGMQ 226

Query: 376 FDLAN 390
           ++  N
Sbjct: 227 WNATN 231


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 250 SDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCG 363
           SD   ++ N+ S  G   DPNP        F+++E+CG
Sbjct: 44  SDVQDIRTNSFSFYGHTHDPNPSKVEQDLRFDEDEFCG 81


>At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)
           identical to SP|P10798 Ribulose bisphosphate carboxylase
           small chain 3B, chloroplast precursor (EC 4.1.1.39)
           (RuBisCO small subunit 3B) {Arabidopsis thaliana}
          Length = 181

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 244 RESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTL 405
           R+++KD    +  S+GG VS      P+  + F    Y  D    +LA EVD L
Sbjct: 37  RKTNKDI--TSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYL 88


>At1g61850.1 68414.m06979 patatin family protein similar to
           membrane-associated calcium-independent phospholipase A2
           gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
           Patatin domain PF01734, PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 1265

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 1   DNYYYYNSLTNGQAYFSDLIVFREDICHFTILKNTLSNMVVKIYISGISGNKEVKKRQQR 180
           +N  Y+ +  +  + FS LI FR   CH  +L +TL  ++       + G  E   RQ  
Sbjct: 229 ENTSYFGASRHKLSAFSPLI-FRSSSCHHPLLASTLVKIMQDEGNRSVIGKDENAVRQLI 287

Query: 181 VLMILDSKNI 210
            ++  D++++
Sbjct: 288 SMITSDNQHV 297


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +1

Query: 214 YEVIDITEPG---RES-DKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGD-YDQF 378
           + V +I+E G   R+S   D+ + +  S  GTV   +PRS     MF D+      Y  F
Sbjct: 711 FGVPEISEGGFNKRDSYQNDYQEEDDSSGSGTVVIRSPRSSQSSSMFRDQSSGSTRYTSF 770

Query: 379 DLANEVDTL 405
           D A+   T+
Sbjct: 771 DDASTSGTV 779


>At1g06030.1 68414.m00631 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 329

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 187 MILDSKNIKYEVID-ITEPGRESDKDFMQNNAKSSGGTVS-DPNPRSPL-PPQMFNDEEY 357
           +I  +K   Y  I  ITEP R +    M+  AK +G  +S DPN R PL P      ++ 
Sbjct: 132 LIRSAKVFHYGSISLITEPCRSAHMKAMEV-AKEAGALLSYDPNLREPLWPSPEEARKQI 190

Query: 358 CGDYDQFDLANEVDTLEQFL 417
              +D+ D+    D   +FL
Sbjct: 191 MSIWDKADIIKVSDVELEFL 210


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 253  DKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY---CGDYDQFDLANEVDTLEQF 414
            D ++  +  K  G  +S+ +  S     + ++ +Y   C D D  DL NE+D  E +
Sbjct: 1090 DDNYNHHKIKGCGIRLSEDDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSEDY 1146


>At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family
           protein similar to fructokinase GI:2102693 from
           [Lycopersicon esculentum]
          Length = 345

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 187 MILDSKNIKYEVID-ITEPGRESDKDFMQNNAKSSGGTVS-DPNPRSPLPPQMFNDE-EY 357
           +I  +K   Y  I  ITEP R +    M+  AK +G  +S DPN R PL P       + 
Sbjct: 131 LIRSAKVFHYGSISLITEPCRSAHMKAMEV-AKEAGALLSYDPNLREPLWPSPEEARTQI 189

Query: 358 CGDYDQFDLANEVDTLEQFL 417
              +D+ D+    D   +FL
Sbjct: 190 MSIWDKADIIKVSDVELEFL 209


>At2g13450.1 68415.m01484 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 394

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 178 RVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY 357
           RV      +N++ EV  + +    S  +     ++SS  T  DP PR P PP   N +E 
Sbjct: 228 RVTNTTAQRNVREEVF-MRDENLRSSMNSQSQMSESSFPTPIDPPPRIPHPP--LNPDEL 284

Query: 358 CGDY 369
              Y
Sbjct: 285 VAAY 288


>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
           protein (GI:11863170) {Zea mays}
          Length = 705

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +1

Query: 166 KRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGG--TVSDPNPRSPL--PP 333
           + Q++   IL+  ++  ++  I  P +   +  +    KS     T S P P +P   P 
Sbjct: 63  EHQEQAKAILEDVDVDVQLNPI--PNKRERRPGLDRKRKSFSLHLTTSQPPPVAPSFDPS 120

Query: 334 QMFNDEEYCGDYDQFDLAN 390
           +    E++   YD+F+LAN
Sbjct: 121 KYPRSEDFFAAYDKFELAN 139


>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 513

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 169 RQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGG 294
           R+ ++L  L  +N+ +    +T PGR+ D     +N K  GG
Sbjct: 72  REIKILKKLHHENVIHLKEIVTSPGRDRDDQGKPDNNKYKGG 113


>At5g38420.1 68418.m04644 ribulose bisphosphate carboxylase small
           chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)
           identical to SP|P10797 Ribulose bisphosphate carboxylase
           small chain 2B, chloroplast precursor (EC 4.1.1.39)
           (RuBisCO small subunit 2B) {Arabidopsis thaliana}
          Length = 181

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 SSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTL 405
           S+GG VS      P+  + F    Y  D    +LA EVD L
Sbjct: 48  SNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYL 88


>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 314

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 178 RVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY 357
           RV      +N++ EV  + +    S  +     ++SS  T  DP PR P PP   N +E 
Sbjct: 148 RVTNSTAQRNVREEVF-MRDENLRSSMNSQSQMSESSFPTPIDPPPRIPHPP--LNPDEL 204

Query: 358 CGDY 369
              Y
Sbjct: 205 VAAY 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,050,270
Number of Sequences: 28952
Number of extensions: 177802
Number of successful extensions: 545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)