Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e23
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...   160   4e-40
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)           158   2e-39
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)           158   2e-39
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    27   3.7  
At3g59690.1 68416.m06660 calmodulin-binding family protein simil...    27   3.7  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    27   4.8  
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    27   4.8  
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim...    26   8.5  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score =  160 bits (388), Expect = 4e-40
 Identities = 69/98 (70%), Positives = 82/98 (83%)
 Frame = +1

Query: 34  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 213
           MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 214 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 327
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPP 98


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score =  158 bits (383), Expect = 2e-39
 Identities = 68/98 (69%), Positives = 81/98 (82%)
 Frame = +1

Query: 34  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 213
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 214 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 327
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPP 98


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score =  158 bits (383), Expect = 2e-39
 Identities = 68/98 (69%), Positives = 81/98 (82%)
 Frame = +1

Query: 34  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 213
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 214 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 327
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPP 98


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 244 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMS 354
           L    S A+ + V  N+SKK      PP   FPR +S
Sbjct: 26  LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS 62


>At3g59690.1 68416.m06660 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 517

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 226 PKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQGSAK 375
           P   A  +   + +  +K+  N + K+R  RTP  +N  R  S P GS K
Sbjct: 408 PPFSAPSYMAPTVSAKAKLRANSNPKERMDRTPVSTNEKRRSSFPLGSFK 457


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 91  AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 234
           ++ C  C   VP+    +K  +       AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613


>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 120 APRAVCASHGFNVTTSMLGASSITALTSHVSNLRSGEQRT 1
           +P+ + A++  N  TSM  A S     SHV++L + E RT
Sbjct: 485 SPQDILATNAANFGTSMPAAQSSQFQGSHVTSLGNCEGRT 524


>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 587

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 74  DVVTLKP*DAQTARGACQRTRPSKS 148
           DVVTL    A+T RG C   RP KS
Sbjct: 204 DVVTLADRLAETYRGFCIPPRPDKS 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,448,587
Number of Sequences: 28952
Number of extensions: 155188
Number of successful extensions: 376
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)