Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e22
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 28 4.7
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 28 4.7
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 27 6.2
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 27 6.2
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 27 6.2
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907... 27 6.2
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 27 8.2
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 288 DMVGRRLRTLAPFVLRGACPQCSVQESRHIRRTLAYIQR 404
+MV + LA F+L C C V+ S+H+R T YI++
Sbjct: 186 EMVTDSIIKLACFLLD--CEYCDVKNSKHLRWTGEYIEK 222
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 297 GRRLRTLAPFVLRGACPQCS---VQESRHIRRTLAYIQRNYPWE 419
G L +LAP + R A P C+ V S I +++ ++ +YPW+
Sbjct: 93 GETLASLAP-LRRLALPACAHRRVPPSSSIAKSILQLEHDYPWD 135
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 406 LRCMYASVRRMCRDSCTEH*GHAPLNTNGANVLNLLPTISQGPSPSAHLRCL 251
L+ + + +D H P N+ A+V+N L T + SPSA LR L
Sbjct: 905 LKTLKVAFHHATKDEVVIHSIRLPKNSTIADVINDLKTKVELSSPSAELRLL 956
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 195 VPPTQLKRDTYIHQ*KLYSSFQNDISFVLSVID 97
VPPT KR ++ L S +QN+I F ID
Sbjct: 232 VPPTVKKRGLVLNDAMLCSYYQNEIKFTDLTID 264
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 120 RYHFEMKNIVFIGVCTCLVLTVLAAPQ 200
RYHF+ K + F C+VL++L P+
Sbjct: 83 RYHFKFKLLSFGHFLFCIVLSILYGPR 109
>03_03_0274 -
16089322-16089365,16089604-16089616,16090367-16090714,
16090771-16090974,16091403-16091504,16091710-16091741,
16092668-16093655,16094461-16094711,16095786-16097795,
16097903-16097954
Length = 1347
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 144 YSSFQNDISFVLSVIDARTIYNRVIMGLKIFP 49
Y F S + S + RTI+NR++MG I P
Sbjct: 511 YPEFDYVQSMMFSHKNCRTIWNRLLMGYDILP 542
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 484 EFERQFKILLNLQPYCRTILAHS 416
++ +Q K + +Q YCR+ LAHS
Sbjct: 839 QYRQQTKAAVIIQSYCRSYLAHS 861
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,330
Number of Sequences: 37544
Number of extensions: 305265
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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