Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e22
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)                       29   2.8  
SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)                      28   3.6  
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26)                    27   8.4  
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)             27   8.4  
SB_11352| Best HMM Match : LRR_1 (HMM E-Value=0.0019)                  27   8.4  

>SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)
          Length = 263

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 298 PTISQGPSPSAHLRCLCIVPLSARVFSNCASDICGAANTVKTRHVHTPMKTIFF 137
           P I +    +A+L  LC +P++  +  +C    C     VK   +++    IFF
Sbjct: 93  PKIWEHIQQNANLLSLCYIPVNCFIICHCLLHSCDHLLPVKITEIYSIFVKIFF 146


>SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)
          Length = 410

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +3

Query: 228 LADKGTMQRHLRCALGEGPCDMVGRRLRTLAPFVLRGA--CPQCSVQESRHIRRTLAYI- 398
           +A  G  +   +  LGE    M+G  L +L  F+L+    C   ++ +   +  T+ Y+ 
Sbjct: 303 IAINGLQEVFNKPCLGESHQQMIGTVLCSLLEFILKNIVFCSSNALDDISSLMATVGYVL 362

Query: 399 QRNYPWEWARIVRQYG*RF 455
           +  YP E  R+      RF
Sbjct: 363 EEKYPHELDRLFNLIRDRF 381


>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 200 LRCRQHS*NETRTYTNENYILHFKMISRSCCP 105
           L  R +  N  R   NENY L  K +  +C P
Sbjct: 103 LHMRDNENNTLRMRDNENYTLRMKRLCANCSP 134


>SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 266 TSEMSLHCAFISKGFF*LCIRHLRCRQHS*NETRTYTNENYIL 138
           T E  LH AFI K      I  +  ++H  N+ R YT++NY++
Sbjct: 396 TPEFPLHHAFIDK------IWDMWEKKHKVNKYRYYTSQNYLM 432


>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 210 AQLEKTLADKGTMQRHLRCALGEGPCDM 293
           AQLE+   +K  +++ L     EGPC++
Sbjct: 488 AQLERVYREKDAVEKELEKVYQEGPCEI 515


>SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26)
          Length = 420

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 298 PTISQGPSPSAHLRCLCIVPLSARVFSNCASDICGAANTVKTRHVHTPMKTIFF 137
           PTI +    +A+L  LC +P++  +  +C          VK   +++    IFF
Sbjct: 129 PTIWEHIQQNANLLSLCYIPVNCFIICHCLLHSPDPVLPVKITEIYSIFVKIFF 182


>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
          Length = 406

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 266 TSEMSLHCAFISKGFF*LCIRHLRCRQHS*NETRTYTNENYIL 138
           T E  LH AFI K      I  +  ++H  N+ R YT++NY++
Sbjct: 339 TPEFPLHHAFIDK------IWDMWEKKHKVNKYRYYTSQNYLM 375


>SB_11352| Best HMM Match : LRR_1 (HMM E-Value=0.0019)
          Length = 507

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 298 PTISQGPSPSAHLRCLCIVPLSARVFSNCASDICGAANTVKTRHVHTPMKTIFF 137
           PTI +    +A+L  LC +P++  +  +C          VK   +++    IFF
Sbjct: 67  PTIWEHIQQNANLLSLCYIPVNCFIICHCLLHSPDPVLPVKITEIYSIFVKIFF 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,565,052
Number of Sequences: 59808
Number of extensions: 370898
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)