Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e22
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    30   0.79 
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    30   1.0  
U23169-5|AAC46698.2|  316|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    27   7.4  

>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -2

Query: 363 PARNIEGMRLSTQTAPTFSIFSPPYRRDLHQVHI 262
           P R IE  RLSTQT P      P   R +H V I
Sbjct: 377 PPRTIEPPRLSTQTPPIMHQQQPQLMRPMHPVPI 410


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 451 LQPYCRTILAHSHG 410
           L+PYC TI+ HSHG
Sbjct: 224 LRPYCNTIMRHSHG 237


>U23169-5|AAC46698.2|  316|Caenorhabditis elegans Hypothetical
           protein C29H12.6 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 215 IRKNPC**RHNAKTSQMCTW*RSLRYGGEKIENVGAVCVERRMPSMFRAGVAAH--SPHT 388
           IR NP    +    S   +  R+  Y     + V A+CV     SM  +G A+H  SP T
Sbjct: 108 IRTNPWIGENKMWESMTSSMGRTTAYDSSSKKRVPALCVASPDTSMCSSGYASHDSSPDT 167

Query: 389 SI 394
           S+
Sbjct: 168 SM 169


>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 290 IAGTFTKCTSEMSLHC 243
           +AG +TKCT E+  HC
Sbjct: 329 LAGLYTKCTEELMDHC 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,924
Number of Sequences: 27780
Number of extensions: 265211
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)