Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e22
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13740.1 68418.m01599 sugar transporter family protein contai...    29   1.7  
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom...    28   3.9  
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical...    27   6.9  
At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative  (...    27   9.1  

>At5g13740.1 68418.m01599 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 486

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 342 CPQCSVQESRHIRRTLAYIQRNYPW 416
           CP C V++ + +RR   Y++ ++ W
Sbjct: 19  CPGCKVEQMKQLRRGYPYLELSFVW 43


>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
           domain-containing protein similar to nuclear protein
           5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
           PF02373: jmjC domain
          Length = 883

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 234 DKGTMQRHLRCALGEGPCDMVGRRLRTLAPFVLRGACPQCS 356
           D G    H+ C           R+ RTL PF+ +G+ P  S
Sbjct: 2   DSGVKLEHMNCFQLSYQYSWTTRKKRTLKPFMSKGSSPSSS 42


>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
           UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
           [Arabidopsis thaliana]; contains Pfam 00415: Regulator
           of chromosome condensation (RCC1)
          Length = 440

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 294 VGRRLRTLAPFVLRGACPQCSVQESRHIRRTLAYIQRNYPWEWAR 428
           VG  L   +P  +R    Q  VQ S   R TLA  +RN  + W R
Sbjct: 310 VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGR 354


>At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative
           (AMP1) identical to GI:15624092 glutamate
           carboxypeptidase {Arabidopsis thaliana}; ileal
           peptidase, Rattus norvegicus, EMBL:AF009921; identical
           to cDNA glutamate carboxypeptidase (AMP1) GI:15624091;
           contains Pfam profiles PF04389: Peptidase family M28,
           PF04253: Transferrin receptor-like dimerisation domain
           and PF02225 PA domain
          Length = 705

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 255 VFALCLYQQGFFLIVHPTSAVPPTQLKRDTY 163
           +F + L+   F+ + HP +  PP    R+ Y
Sbjct: 29  LFVIVLFVATFYTLHHPDAVTPPLLFSRNAY 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,133,131
Number of Sequences: 28952
Number of extensions: 238050
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)