Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e20
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 188 5e-49
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 29 0.34
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 28 0.79
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 26 3.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 5.6
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 5.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.3
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 7.3
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 24 9.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 24 9.7
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 188 bits (457), Expect = 5e-49
Identities = 84/127 (66%), Positives = 105/127 (82%)
Frame = +2
Query: 80 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 259
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 260 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 439
+F + +V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 440 IPFRGLF 460
+ FRGLF
Sbjct: 121 VAFRGLF 127
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 29.1 bits (62), Expect = 0.34
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 5 FISKASHSPVLSVFVYYSK---VFSFNKMPLQMT--KPAPQFKATAVVNGEFKDISLSDY 169
FI+ S + + SVFV +F+ + L P P F+ + +G+F S +
Sbjct: 234 FIASYSLAEITSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTIL 293
Query: 170 KGKYVVLFFYPLDFTFVCPTE 232
K K V L YP TF TE
Sbjct: 294 KSKPVSLCVYPEKITFNWLTE 314
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.79
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Frame = +2
Query: 8 ISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLS 163
+S S S F+Y SF++ T +P+ TA+ FK +
Sbjct: 26 LSPIGDSKNTSSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTT 85
Query: 164 DYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 271
YK F + D+T PT + S+ DEF K
Sbjct: 86 SYKD-----FVFSRDYTNWTPTFWVLLSQLIDEFLK 116
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = -2
Query: 291 PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 112
P TS +L +S+ + + +++ T + S N T P+ S ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 3.2
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Frame = +2
Query: 83 PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 223
P+ + KPA +T V DI+L D G K +V+F YP T C
Sbjct: 30 PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89
Query: 224 PTEIIAFSEKADEFRKIGCEVLGASTDS 307
+ F + + + EVLG S D+
Sbjct: 90 TKQGCGFRDNYPKIQASDYEVLGLSFDT 117
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 56 SKVFSFNKMPLQMTKPAPQFKATAVVN 136
S +FSFN TKP+P +T N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 350 GGLGPMNIPLISDKS 394
GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 212 TFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFT 316
TF T + E DEF ++G +VLG D+ T
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIIT 590
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 124 RGLELGSGFGHLQRHLVETKD 62
R L+LG+G GHL L+E +D
Sbjct: 67 RVLDLGTGNGHLLFRLLEEED 87
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 24.2 bits (50), Expect = 9.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 77 KMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFF 196
K+ LQ+ KP + VV LS+ + KYV L+F
Sbjct: 198 KLILQLQKPLKLYSLIKVVTYLRVTAKLSEAQLKYVFLYF 237
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 372 MFMGPSPPCLRGVLIQARCVKCESVEAPSTSQPILRNSSAFSENAMISVGHTNV 211
+F+ PS +RC + T++P LRN + + MI +G ++
Sbjct: 1207 LFIHPSSTMFVNSPNASRCTFVAYEQKVETTKPFLRNCTPINTYGMILLGANDI 1260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,529
Number of Sequences: 5004
Number of extensions: 26549
Number of successful extensions: 74
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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