Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e20
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 97 6e-21
06_01_0671 - 4899611-4899829,4900870-4901448 58 3e-09
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 58 4e-09
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 56 1e-08
02_01_0691 - 5167260-5167937 41 4e-04
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 38 0.003
07_03_0575 - 19637277-19637681 29 1.4
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 29 2.4
07_03_1402 + 26302443-26302575,26302851-26302980,26303128-26303893 28 3.1
05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524 28 3.1
03_03_0101 - 14431327-14432390,14432599-14432731 28 3.1
02_03_0183 + 16106205-16106474 28 3.1
02_02_0154 + 7263707-7263782,7263908-7264248 28 3.1
01_06_0448 + 29462920-29463052,29463220-29463349,29463608-294637... 28 3.1
01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496 28 3.1
11_01_0249 - 1913739-1914755 27 7.3
09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426 27 7.3
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820 27 7.3
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 27 7.3
08_02_0941 + 22829689-22830012,22830077-22830460 27 9.6
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 27 9.6
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 97.1 bits (231), Expect = 6e-21
Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Frame = +2
Query: 11 SKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK-YVV 187
+ +S S S FV ++ + PL K AP F A AV + EF ++ LSDY GK YV+
Sbjct: 46 ASSSRSARASSFV--ARAGGVDDAPLVGNK-APDFDAEAVFDQEFINVKLSDYIGKKYVI 102
Query: 188 LFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDS 307
LFFYPLDFTFVCPTEI AFS++ DEF K+ E+LG S DS
Sbjct: 103 LFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDS 142
Score = 64.1 bits (149), Expect = 5e-11
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +2
Query: 311 FTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 460
F+HLAW+ T RK GGLG + PLISD + IS+ +GVL + GI RGLF
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLF 261
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 58.0 bits (134), Expect = 3e-09
Identities = 32/90 (35%), Positives = 55/90 (61%)
Frame = +2
Query: 152 ISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWI 331
+SLS +KG+ VV++FYP D T C + AF + ++F+K G EV+G S D +H +
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195
Query: 332 NTPRKQGGLGPMNIPLISDKSHRISRDYGV 421
+K+ L P L+SD+ +++ +++GV
Sbjct: 196 ---KKKYKL-PFT--LLSDEGNKVRKEWGV 219
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 57.6 bits (133), Expect = 4e-09
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +2
Query: 152 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW 328
I + D+ G YV+LF +P DFT VC TE+ A + A EF K G ++LG S D +H W
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDW 116
Query: 329 INTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEE 433
I + P+++D S + ++D +
Sbjct: 117 IKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPD 151
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +2
Query: 152 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW 328
I L D+ G YV++F +P DFT VC TE+ + A EF K G ++LG S D +H W
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDW 81
Query: 329 INTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEE 433
I + P+++D R ++D +
Sbjct: 82 IKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDAD 116
>02_01_0691 - 5167260-5167937
Length = 225
Score = 41.1 bits (92), Expect = 4e-04
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +2
Query: 134 NGEFKDISLSDYK-GKYVVLFFYPLDFTFVCPTEII-AFSEKADEFRKIGCEVLGA-STD 304
+GE K +++++ G+ VLF P FT C + + F EKA E G + + S +
Sbjct: 81 DGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVN 140
Query: 305 SHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGV 421
F AW ++ GLG ++ L+SD + ++R GV
Sbjct: 141 DAFVMRAW----KESLGLGDADVLLLSDGNLELTRALGV 175
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 215 FVCPTEIIAFSEKADEFRKIGCEVLGASTDS 307
FV EI AFS++ +EF KI EVLG S DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_0575 - 19637277-19637681
Length = 134
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -2
Query: 390 LSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTSQPILRNSSAFSENAMISVGHT 217
+ + G P C R V + K ESV A + +L N F NA VG T
Sbjct: 49 IKFLSNKLSGHEPTCKRIVAVGTGSSKSESVVAVDKVESMLCNLDRFEANAQHEVGPT 106
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = -2
Query: 453 PRKGMPVSSSSTP*SREMRCDLSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTSQ- 277
P P +ST S D + RG+ G PP L C++C SV A +
Sbjct: 369 PSAAAPTGFASTDRSGGAGRDRAFARGICFGDPPPALS----PQYCLRCLSVAAKELADG 424
Query: 276 -PILRNSSAFSENAMISVGHTNVKS 205
P R ++ +++ S T+ S
Sbjct: 425 CPAKRRAAVWTDGCFASFADTSALS 449
>07_03_1402 + 26302443-26302575,26302851-26302980,26303128-26303893
Length = 342
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 449 GRGCPSPRPALRSRGRCGATCRL 381
G GC S P L RCG +CRL
Sbjct: 33 GHGCWSSVPKLAGLERCGKSCRL 55
>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
Length = 427
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 449 GRGCPSPRPALRSRGRCGATCRL 381
G GC S P L RCG +CRL
Sbjct: 33 GHGCWSSVPKLAGLQRCGKSCRL 55
>03_03_0101 - 14431327-14432390,14432599-14432731
Length = 398
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 449 GRGCPSPRPALRSRGRCGATCRL 381
G GC S P L RCG +CRL
Sbjct: 33 GHGCWSSVPKLAGLERCGKSCRL 55
>02_03_0183 + 16106205-16106474
Length = 89
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 374 PLISDKSHRISRDYGVLDEETGIP 445
PL S HR SR +G L E +G P
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFP 82
>02_02_0154 + 7263707-7263782,7263908-7264248
Length = 138
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 444 GMPVSSSSTP*SREMRCDLSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTS 280
G+ +S +T S + C LSL + PS CL+ A + C + AP S
Sbjct: 25 GVIATSKATSKSYKAACTLSLATCLPSLPSDKCLKAAFAAATSLLCLTAGAPPPS 79
>01_06_0448 +
29462920-29463052,29463220-29463349,29463608-29463732,
29463923-29464458
Length = 307
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 449 GRGCPSPRPALRSRGRCGATCRL 381
G GC S P L RCG +CRL
Sbjct: 33 GHGCWSSVPRLAGLQRCGKSCRL 55
>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
Length = 428
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 449 GRGCPSPRPALRSRGRCGATCRL 381
G GC S P L RCG +CRL
Sbjct: 33 GHGCWSTVPKLAGLQRCGKSCRL 55
>11_01_0249 - 1913739-1914755
Length = 338
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +2
Query: 17 ASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFF 196
A+HSP V ++VF +++P + PAP+ T + + D S++D K V L
Sbjct: 106 AAHSPHQLVPFLETQVFIKDRIPDLSSLPAPRLLMTHIPSQSLPD-SVADSSCKVVYLCR 164
Query: 197 YPLD 208
P D
Sbjct: 165 DPKD 168
>09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426
Length = 482
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 257 DEFRKIGCEVLGASTDSHFTHLAWINT 337
D + I +++GA+TD+ F L WI T
Sbjct: 272 DNVKAIIKDIMGAATDTSFVTLEWIMT 298
>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
Length = 357
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 449 GRGCPSPRPALRSRGRCGATCRL 381
G GC S P L RCG +CRL
Sbjct: 36 GVGCWSSVPKLAGLERCGKSCRL 58
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 341 RKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIP 445
+K+ G G N+P D R ++DY +DE+ +P
Sbjct: 65 KKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVP 99
>08_02_0941 + 22829689-22830012,22830077-22830460
Length = 235
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 331 QHAAQAGRTRSHEHPSDKRQVAPHLP 408
+HA+Q H P+ RQ HLP
Sbjct: 5 EHASQGAEAAEHRPPAQPRQEDQHLP 30
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +2
Query: 128 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 271
++N + K ++ D+ GK+ +L+F +CP E+ + D+ ++
Sbjct: 187 LLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKE 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,854
Number of Sequences: 37544
Number of extensions: 201305
Number of successful extensions: 770
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -