Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e20
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 184 3e-47
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 9e-31
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 61 5e-10
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08) 29 1.8
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081) 27 7.5
SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7) 27 9.9
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 27 9.9
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96) 27 9.9
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 184 bits (448), Expect = 3e-47
Identities = 84/138 (60%), Positives = 107/138 (77%), Gaps = 4/138 (2%)
Frame = +2
Query: 59 KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 226
++ SF++ + T KPAP F TAV +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39 RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98
Query: 227 TEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRIS 406
TEIIAFS++ DEF+ I CEV+ S DS ++HLAW N PRK+GG+G +NIP++SD + +IS
Sbjct: 99 TEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQIS 158
Query: 407 RDYGVLDEETGIPFRGLF 460
+DYGVL E+ G+ RGLF
Sbjct: 159 KDYGVLLEDQGVALRGLF 176
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 129 bits (312), Expect = 9e-31
Identities = 56/80 (70%), Positives = 69/80 (86%)
Frame = +2
Query: 89 QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 268
Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55 QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114
Query: 269 KIGCEVLGASTDSHFTHLAW 328
I EV+G S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 60.9 bits (141), Expect = 5e-10
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +2
Query: 332 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 460
N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ RGLF
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLF 45
>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
Length = 416
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +2
Query: 11 SKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 178
S +S SPVLSV + V S + +Q T P F AT + G F D L+ GK
Sbjct: 204 SSSSRSPVLSVTDGIA-VQSSSTESVQPTLILPPFTATGLHTGSFYDDCLAVLSGK 258
>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
Length = 754
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 59 KVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 178
K FSF P + +P P+ K V + + ISL+ K
Sbjct: 321 KTFSFELAPSAIARPLPKSKHAKTVENDVRLISLTSQVAK 360
>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 175 EICCAVLLSFGLHVRVPDGDHRVLGEGGRVPQD 273
+ CC V +FG DHR+LG D
Sbjct: 475 DFCCTVKAAFGYKKNATTKDHRMLGTNNVASND 507
>SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)
Length = 810
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 194 FYPLDFTFVCPTEIIAFSEKADEF 265
F P+ VCPT+ +AF++ D F
Sbjct: 400 FPPIQEDTVCPTQRVAFADHVDTF 423
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 26.6 bits (56), Expect = 9.9
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = -2
Query: 450 RKGMPVSSSSTP*SREMRCDLSLIRGMFMG-PSPPCLRGVLIQARCVKCESVEAPSTSQP 274
+K P S + +SLIR G C R V +RC+KCE V +
Sbjct: 685 KKNRPFEKSELTKDQLAGYSVSLIRYGPRGLKCEECFR-VTATSRCIKCECVFCALCFEK 743
Query: 273 ILRNSSAFSENAMISVGHTNVKSKG 199
I+ + E ++V T+ + G
Sbjct: 744 IMDDLKKLKEMPCVAVKTTDSRDNG 768
>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
Length = 725
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 284 VLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPF 448
+LG TDS ++ I+ + GGLG +IS + RD G+ ETG+ F
Sbjct: 66 ILGP-TDSLYSECTLIDKGWRTGGLGEGLNGMISTRKRARKRDLGM---ETGLEF 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,691
Number of Sequences: 59808
Number of extensions: 209895
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -