BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e18 (506 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 55 7e-09 SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 25 4.9 SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 25 8.6 SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 8.6 >SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 248 Score = 54.8 bits (126), Expect = 7e-09 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Frame = +1 Query: 157 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 336 ++ G I+E I T+IPA LI +A +T+K+IG Q + YE +D Sbjct: 69 KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128 Query: 337 F-----NNIEFDSYIIPSNEIKNNEFRLLDVD 417 F + FDSY++P +++ R L+VD Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVD 160 >SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 683 Score = 25.4 bits (53), Expect = 4.9 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -1 Query: 443 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 330 LF+ R +T SRN+L+FI LD SN + SE Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201 >SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosaccharomyces pombe|chr 3|||Manual Length = 193 Score = 24.6 bits (51), Expect = 8.6 Identities = 8/37 (21%), Positives = 22/37 (59%) Frame = -1 Query: 452 RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 342 ++W+ +I +S +NSR ++ + DG++ +++ Sbjct: 21 KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLM 57 >SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr 3|||Manual Length = 505 Score = 24.6 bits (51), Expect = 8.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -2 Query: 421 DYLHLIVGIHYFLFHWMGLY 362 D+ L++GIH F +H LY Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,353,156 Number of Sequences: 5004 Number of extensions: 19744 Number of successful extensions: 48 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 47 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 202220600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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