Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e18
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG...    27   5.5  
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ...    27   7.3  

>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
           family protein similar to phosphatidylinositolglycan
           class N short form GB:BAA82620 [gi:5631308] [Mus
           musculus]
          Length = 921

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 494 LXMNELHRLPVIIIRIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSI 345
           + +NE   +  ++      + +++R S   S NSLFF     +++ S S+
Sbjct: 401 MKLNEAEEVEAVVANTKQILNQLLRKSYIKSSNSLFFKPFKPLVHHSFSL 450


>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
           SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
           Zea mays
          Length = 472

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 443 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSEYSYLQ 315
           L + +++R     SRN +   + DG +YE+N +++ +    LQ
Sbjct: 207 LKLNQVVR-EVQQSRNGVVVKTEDGSVYEANYVIVSASIGVLQ 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,403,335
Number of Sequences: 28952
Number of extensions: 84195
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)