Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e16
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    28   1.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   1.4  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   2.5  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    27   2.5  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   3.3  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   3.3  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   5.8  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   5.8  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    25   7.7  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 25/83 (30%), Positives = 37/83 (44%)
 Frame = -2

Query: 409  VRSSGPTCELC*SRPLGRRLGRKVHFFRRSNSCRDHRPRRLTAP*RSQTFSKQNFPSLLC 230
            +R  G +  +  +R LG  LG         N     RP  LT     Q+FS  +FPSL+ 
Sbjct: 1523 IRVVGLSVSVANARDLGEWLGTSPQCI--FNFSPKDRPNPLTI--HLQSFSITHFPSLML 1578

Query: 229  DLNRPKPFLFHFYITLYSSTIQF 161
             +++P       +I+   STI F
Sbjct: 1579 AMSKPIYRSLKNFISQRKSTIVF 1601


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 271 SQTFSKQNFPSLLCDLNRPKPFLFHFYITLYSSTIQFFYVHS 146
           S T  +++   L+  L+   P L HF   L  ++ QF Y HS
Sbjct: 447 SNTMHERHIRLLVSYLSNRFPILLHFPFLLKKNSAQFAYSHS 488


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 259 KKSENATEQSVAEDDDRDR-SSIAEKNVPYDP 351
           +K + A  +SV   DD D    I+ K V YDP
Sbjct: 239 RKKDEADAESVLSSDDNDSIEEISIKKVKYDP 270


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 392 RTGRSDTGASARAERSHTRRYSPRRSWDRY 481
           R    D  +S R E S  R YSP R  DRY
Sbjct: 37  RRNYRDERSSRRYEDSQRRDYSPARRRDRY 66


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 286 SVAEDDDRDRSSIAEKNVPY 345
           S+  +DD ++  +AE+NVPY
Sbjct: 3   SIPNEDDLEKLLVAEQNVPY 22


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 274 RSQTFSKQNFPSLLCDLNRPKP 209
           RS  FSKQ F   LC  N P+P
Sbjct: 143 RSSEFSKQFFSERLCKPNVPEP 164


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 468 DLRGLYLLVCDLSALADAPVSDLPVRLVNFADRAHWA 358
           +L+ L  L  D+S ++  P S L   +  FA+R H A
Sbjct: 70  NLQFLLYLNLDMSEMSTVPASTLVTYVQTFANRGHQA 106


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 210 HFCFTFTSLCIQVLFNSFMCTVTILMA 130
           HFC  F  + I V   S++ TVT ++A
Sbjct: 141 HFCLYFIYIAIGVFGCSYIYTVTFIIA 167


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 211 ASGDSDHIEVMESSVLKKSENATEQSVAEDDD 306
           AS D + +++ ES    ++E   +  VAEDDD
Sbjct: 326 ASEDEEDVDMHESISDNENEGIKDIPVAEDDD 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,339
Number of Sequences: 5004
Number of extensions: 45981
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)