Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e16
(563 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_6433| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) 29 2.0
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0) 29 2.0
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2) 29 3.5
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 29 3.5
SB_41023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2) 28 6.1
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28) 28 6.1
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 27 8.0
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3) 27 8.0
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_55671| Best HMM Match : Borrelia_rep (HMM E-Value=0.00026) 27 8.0
SB_14696| Best HMM Match : ETS_PEA3_N (HMM E-Value=8.5) 27 8.0
>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/61 (44%), Positives = 33/61 (54%)
Frame = +1
Query: 379 KVHKSDRKIGHRRVGEGGEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQDFMT 558
KV K+GHRRV E GE TYKK +G L++KPERD+LMQDF
Sbjct: 47 KVTTPKSKLGHRRVDEKGETTYKK-----------------VGRLSAKPERDVLMQDFAQ 89
Query: 559 V 561
+
Sbjct: 90 I 90
>SB_6433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 379 KVHKSDRKIGHRRVGEGGEITYKK 450
KV K+GHRRV E GE TYKK
Sbjct: 18 KVTTPKSKLGHRRVDEKGETTYKK 41
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 30.7 bits (66), Expect = 0.86
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 305 IATGVRSPKKMYLTTQPSAQWARS-AKFTSRTGRSDTGASARAERSHTRRYS 457
I T +RS T+ S+ RS K +S T R TG S+ R HTRR S
Sbjct: 533 IVTVLRSSNTTRGHTRRSSNTTRSHTKRSSNTTRRHTGRSSNTTRRHTRRSS 584
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 386 TSRTGRSDTGASARAERSHTRRYS 457
+S T RS TG S+ RSHTRR S
Sbjct: 1105 SSNTTRSHTGRSSNTTRSHTRRSS 1128
Score = 29.5 bits (63), Expect = 2.0
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 272 TLRSSQSPRTMIATGVRSPKKMYLTTQPSAQWARS-AKFTSRTGRSDTGASARAERSHTR 448
T RSS + R++ RS T+ S+ RS + +S T RS T S+ RSHTR
Sbjct: 688 TRRSSNTTRSLTR---RSSNTTRGHTRRSSNTTRSHTRRSSNTTRSLTRRSSNTTRSHTR 744
Query: 449 RYS--PRRSWDRYS*ASSTL*EA*RRSPNAIYS 541
R S RR R +S+T RRS N S
Sbjct: 745 RSSNTTRRHTRR---SSNTTRRHTRRSSNTTRS 774
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 320 RSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASARAERSHTRRYS 457
RS K++ +T + +S T RS T S+ R HTRR S
Sbjct: 582 RSSKQLAVTQDGQVTTRGHTRRSSNTTRSHTRRSSHTTRGHTRRSS 627
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +2
Query: 272 TLRSSQSPRTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASARAERSHTRR 451
T RSS + R+ + ++ T + S R + +S T RS T S+ R HTRR
Sbjct: 732 TRRSSNTTRSHTRRSSNTTRRH--TRRSSNTTRRHTRRSSNTTRSHTRRSSNTTRGHTRR 789
Query: 452 YS 457
S
Sbjct: 790 SS 791
>SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 30.7 bits (66), Expect = 0.86
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 85 LERILNSGDTAK-CEVSHENRYCAHKRI 165
L R L SGD A C V H R+CAH+ I
Sbjct: 80 LRRTLESGDFADVCFVIHGQRFCAHRAI 107
>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 118 SRYHHYSVFSLI*LKRNQLLYGKNRSCKATRLTRSL 11
+R ++ SV L L R+Q LYG +SC R R L
Sbjct: 8 TRTYNISVVGLSGLDRDQSLYGVGKSCLCNRFVRPL 43
>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2671
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 336 CTLRPSRRPNGRDQQSSQVGPEDRTPAXXXXXXDH-IQED-TVLADHGIDTARHPARYRR 509
C +R SR P GR + R+ +H + ED +V++D +DT P
Sbjct: 1771 CWVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENHCLSEDQSVISDSEMDTGEAPNATNF 1830
Query: 510 PSVEARTRSTH 542
P ++ T S+H
Sbjct: 1831 PCLQNSTESSH 1841
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 263 SLRTLRSSQSPRTMIATGVRSPKKMYLTTQPSAQWARS--AKFTSRTGRSDTGASARAER 436
SL +LRS S R + S + + T P + W RS + T+ T +D AS++ R
Sbjct: 535 SLSSLRSRASWRLLSDVLGSSMVSLSVATTPCSSWTRSVFSWMTASTSATDPIASSKPLR 594
Query: 437 SHTRRYSPRRS 469
T R P S
Sbjct: 595 FATSRRMPPSS 605
>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
Length = 1705
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 336 CTLRPSRRPNGRDQQSSQVGPEDRTPAXXXXXXDH-IQED-TVLADHGIDTARHPARYRR 509
C +R SR P GR + R+ +H + ED +V++D +DT P
Sbjct: 83 CWVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENHCLSEDQSVISDSEMDTGEAPNATNF 142
Query: 510 PSVEARTRSTH 542
P ++ T S+H
Sbjct: 143 PCLQNSTESSH 153
>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1256
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 295 EDDDRDRSSIAEKNVPYDPAVGPMGAISKVHKSD-RKIGHRRVGEGGEITYKKIQSSQIM 471
E+ D I ++ DP G + A++K HK D R I +G+G E+ +K+ +S +
Sbjct: 675 EESDNRTPLINFLSMGSDPT-GMIEALAKKHKYDCRAIS---MGQGQEVHARKLLNSFMQ 730
Query: 472 GSIQLGIQHAIGGLASKPERDLLMQDF 552
+ LG++ + + + E + + +DF
Sbjct: 731 TNCHLGLEFMLELIDTVVESEHIHEDF 757
>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
Length = 376
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 376 SKVHKSDRKIGHRRVGEGGEITYKKIQSSQIMG 474
S HK+ +K+GHR G+G + +K + + G
Sbjct: 340 SVYHKTTKKLGHRDTGKGESVYHKTRKKASTSG 372
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 260 KSLRTLRSSQSPRTMIATGVR-SPKKMYLT---TQPSAQWARSAKFTSRTG-RSDTGASA 424
K++R SP+T G R SPK T T P + S K +S+T ++ S
Sbjct: 107 KTMRMKSLKTSPKTSPEIGPRTSPKTSSKTSPKTSPKSSPKTSPKTSSKTSLKTSQKTSL 166
Query: 425 RAERSHTRRYSPRRS 469
A R +RR S +RS
Sbjct: 167 NASRKTSRRTSLKRS 181
>SB_41023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 253 VLKKSENATEQSVAEDDDRDRSSIAEKNVPYDPAVGPMGAISKVHKSDRKI 405
V KKS +++ S + D++ ++ S K P A P G ++ SD ++
Sbjct: 7 VFKKSSSSSSSSSSSDEETEKDSKVSKPPPEKLAESPRGEPWRITHSDIEV 57
>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
Length = 409
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -2
Query: 202 FHFYITLYSSTIQFFYVHSNDSHGSLRTSRYHHYSVFS 89
+H YI +Y+S + ++++ H + S YH Y +++
Sbjct: 276 YHIYI-IYASPYHIYIIYASPYHICIYASPYHTYIIYA 312
>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
Length = 693
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 397 GPTCELC*SRPLGRRLGRKVHFFRRSNSCRDHRPRRLTAP*RSQTFSKQ-NFPSLLC 230
G TCELC R L RR G K H C R TAP + + K +FP C
Sbjct: 331 GQTCELCGKRLLSRR-GIKEH----KQRCVKRTVDRATAPPKPEKEKKTGSFPCEKC 382
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 226 DHIEVMESSVLKKSENATEQSVAEDDDRDRSSIAEKNVPYDPAVGPMGA-ISKVHKSDRK 402
DH + ES V ++ EN+ E+ + +D++ S E + P + A + + K RK
Sbjct: 867 DHNDDEESVVKEEPENSQEEEI-DDEEAAESKTEETSPPSKKENNHVPAWLERGRKKIRK 925
Query: 403 IGHRRVGEGGEITYKKIQ 456
+ R + GE ++K++
Sbjct: 926 LWKRINNKKGEKYWQKLR 943
>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
Length = 529
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 272 TLRSSQSPRTMIATGVRSPKKMYLTTQPSAQWARSAKFTSRT 397
T RS +PR+ + +R+P TT A + SA+ T T
Sbjct: 432 TRRSRSTPRSRAGSRIRTPSTSTTTTSSRASFRGSARGTRTT 473
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 311 TGVRSPKKMYLTTQPSAQWARSAKFTSRTGRSD---TGASARAERSHTRRYSPRRS 469
+G ++ L T+PS A SA T+ +GR+ T ASAR + R R S
Sbjct: 205 SGDEEGRRRGLRTRPSPSTASSANETNESGRTTHARTAASARGRGNRRGRTGTRSS 260
>SB_55671| Best HMM Match : Borrelia_rep (HMM E-Value=0.00026)
Length = 294
Score = 27.5 bits (58), Expect = 8.0
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 456 LYLLVCDLSALADAPVSD-LPVRLVNFADRAHWADGWVVRYIFFGDRTPVAIIVLGD*LL 280
L +LV DL L D PVSD L +R + +D + D V ++ D + ++ L LL
Sbjct: 65 LDILVSDLLYLRDMPVSDLLYLRDILVSDLLYLRDMSVSDLLYLRDMSVSDLLYLHLALL 124
Query: 279 RSVL 268
R +L
Sbjct: 125 RDIL 128
>SB_14696| Best HMM Match : ETS_PEA3_N (HMM E-Value=8.5)
Length = 375
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 324 RRKKCTLRPSRRPNGRDQQSSQVG 395
RR+K RPS+RP D+++S+ G
Sbjct: 15 RRRKGRGRPSKRPRREDEENSEKG 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,472,543
Number of Sequences: 59808
Number of extensions: 377052
Number of successful extensions: 1384
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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