Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e16
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.92 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 486 RHPARYRRPSVEARTRSTHAGLHDR 560
           RH  RY+RP      R+T +  +DR
Sbjct: 154 RHHPRYKRPRTTFEPRATDSRHYDR 178


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 208 FLFHFYITLYSSTIQFFYVHSNDSHGS 128
           F+F  +  ++++ IQF  VH    +GS
Sbjct: 279 FVFLSFAFIFATIIQFAVVHYFTKYGS 305


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 168 FNSFMCTVTILMAHFALRGITTIQYSL 88
           +N    T   ++ HF + G   IQY+L
Sbjct: 88  YNMLRTTAINVIRHFGIVGECNIQYAL 114


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 211 PFLFHFYITLYSSTIQFF 158
           PF  H    ++SSTI F+
Sbjct: 199 PFTEHLGYLIFSSTISFY 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,151
Number of Sequences: 438
Number of extensions: 3053
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)