Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e15
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   2.3  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   5.3  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   5.3  

>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 371 YHKFYAIKMTPKKTMSPRRNLGKTGEKLKS*RRPEKLEQXQPLLMKQ 511
           Y ++ AI    +K++ PRR+ G+T  K  S   P+   Q   + +KQ
Sbjct: 162 YEEYLAI--AKEKSLIPRRSRGRTSSKSLSPPAPQDESQGTEINLKQ 206


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 329 KILYRQWRRRLVYLYHKFYAIKMTPKKTMSPRRNLGKTGEKLKS*RRP 472
           K+L+  W+ ++ Y Y  F      P KT +  +NL    +++K+  RP
Sbjct: 6   KLLHPDWKEKVTYSYEFF------PPKTSTGVQNLYNRIDRMKTWGRP 47


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 146 KIDTSNNLCLQFLMLK*FKNKKDRKDIVSCEPKN*CFRL*LFYHK 280
           K+D    L LQ+LM+  F ++  RK + +    N  FR   F HK
Sbjct: 213 KVDNPKGL-LQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHK 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,517
Number of Sequences: 5004
Number of extensions: 29853
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)