BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e15 (528 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 54 5e-08 05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 27 9.3 04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826... 27 9.3 02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276... 27 9.3 01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 27 9.3 >08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605, 1579850-1580399,1580514-1580813,1581093-1581133, 1581359-1581606,1581983-1582086,1582177-1582323 Length = 560 Score = 54.4 bits (125), Expect = 5e-08 Identities = 26/33 (78%), Positives = 27/33 (81%) Frame = +1 Query: 430 SREDWRKAKELEEARKAGTAPAAVDETGKDINP 528 SRED RK ELEEARKAG APA VDE GK+INP Sbjct: 10 SREDHRKQLELEEARKAGLAPAEVDEDGKEINP 42 >05_05_0046 - 21834942-21835055,21835145-21835220,21835297-21835553, 21835643-21835741,21835820-21836018,21836102-21836315, 21836470-21836538,21836626-21836950,21837065-21837235, 21837315-21837479,21837555-21838191,21838258-21838319, 21838581-21838652,21839256-21839291,21839361-21839489 Length = 874 Score = 27.1 bits (57), Expect = 9.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 122 SYTICVLKKIDTSNNLCLQFLMLK*FKNKKDRKDIVSC 235 S C K S N C+ FLM+K +N + RK ++C Sbjct: 291 SMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITC 328 >04_04_1328 - 32682087-32682200,32682290-32682365,32682442-32682698, 32682788-32682886,32682965-32683163,32683247-32683460, 32683615-32683683,32683772-32684096,32684211-32684381, 32684461-32684625,32684701-32684814,32685228-32685336, 32685403-32685464,32685726-32685797,32686401-32686436, 32686506-32686634 Length = 736 Score = 27.1 bits (57), Expect = 9.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 122 SYTICVLKKIDTSNNLCLQFLMLK*FKNKKDRKDIVSC 235 S C K S N C+ FLM+K +N + RK ++C Sbjct: 153 SMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITC 190 >02_04_0664 + 24826714-24826842,24826912-24826947,24827551-24827622, 24827882-24827943,24828010-24828646,24828722-24828886, 24828966-24829136,24829251-24829575,24829663-24829731, 24829886-24830099,24830183-24830381,24830460-24830558, 24830648-24830904,24830981-24831056,24831146-24831259 Length = 874 Score = 27.1 bits (57), Expect = 9.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 122 SYTICVLKKIDTSNNLCLQFLMLK*FKNKKDRKDIVSC 235 S C K S N C+ FLM+K +N + RK ++C Sbjct: 291 SMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITC 328 >01_06_1351 - 36510599-36510712,36510802-36510877,36510954-36511210, 36511300-36511398,36511477-36511675,36511759-36511972, 36512127-36512195,36512283-36512607,36512722-36512892, 36512972-36513136,36513212-36513848,36513915-36513976, 36514237-36514308,36514912-36514947,36515017-36515145 Length = 874 Score = 27.1 bits (57), Expect = 9.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 122 SYTICVLKKIDTSNNLCLQFLMLK*FKNKKDRKDIVSC 235 S C K S N C+ FLM+K +N + RK ++C Sbjct: 291 SMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITC 328 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,333,387 Number of Sequences: 37544 Number of extensions: 156235 Number of successful extensions: 289 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 286 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 289 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1166441080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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