Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e15
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37120.1 68417.m05257 expressed protein                             54   4e-08
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein...    54   6e-08
At3g45950.1 68416.m04972 splicing factor-related similar to step...    52   2e-07
At5g33200.1 68418.m03919 hypothetical protein predicted replicat...    33   0.090
At3g42980.1 68416.m04514 hypothetical protein                          28   4.5  

>At4g37120.1 68417.m05257 expressed protein
          Length = 536

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 26/33 (78%), Positives = 27/33 (81%)
 Frame = +1

Query: 430 SREDWRKAKELEEARKAGTAPAAVDETGKDINP 528
           SRED RK  ELEEARKAG APA VDE GK+INP
Sbjct: 10  SREDHRKKLELEEARKAGLAPAEVDEDGKEINP 42


>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 535

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 26/33 (78%), Positives = 27/33 (81%)
 Frame = +1

Query: 430 SREDWRKAKELEEARKAGTAPAAVDETGKDINP 528
           SRED RK  ELEEARKAG APA VDE GK+INP
Sbjct: 10  SREDHRKQIELEEARKAGLAPAEVDEDGKEINP 42


>At3g45950.1 68416.m04972 splicing factor-related similar to step II
           splicing factor SLU7 [Homo sapiens] GI:4249705
          Length = 385

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +1

Query: 430 SREDWRKAKELEEARKAGTAPAAVDETGKDIN 525
           SR+D RK KELEEARKAG APA VDE GK+IN
Sbjct: 10  SRKDHRKQKELEEARKAGLAPAEVDEGGKEIN 41


>At5g33200.1 68418.m03919 hypothetical protein predicted replication
           A1 proteins - Arabidopsis thaliana
          Length = 426

 Score = 33.5 bits (73), Expect = 0.090
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -2

Query: 386 RKICDIGTRDVVAIVCTIFS*YVVINFIHDYFGCSFCDKKVTN 258
           + ICD+     V +VCTI++  + +++   YF C  C+KKVT+
Sbjct: 186 KSICDLLHSMEVRVVCTIYA--LDLDWSWYYFSCRNCNKKVTH 226


>At3g42980.1 68416.m04514 hypothetical protein
          Length = 303

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 353 VAIVCTIFS*YVVINFIHDYFGCSFCDKKVTN 258
           V +VCTI++  +  ++   YF C  C+KKVT+
Sbjct: 242 VRVVCTIYA--LDTDWSWYYFSCRNCNKKVTH 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,854,641
Number of Sequences: 28952
Number of extensions: 142498
Number of successful extensions: 295
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)