Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e12
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)          28   7.3  

>SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 246 SPCCVPLDTCSHCLTIQCRHSTKRYSRTLRLQRCGYIKEFQH 371
           SP C+P   CSH  + +  H T  ++  LR++ CG+ + +++
Sbjct: 53  SPSCIPDSLCSHSAS-RASHQTHSHTPYLRMRCCGWSRVYRN 93


>SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 284 FNNPVSAFYKA-LLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIF 454
           F +P  AFY   LL   A    R+  R+P     LSR   A   + DS +    S+ F
Sbjct: 299 FTDPTKAFYVTQLLKGYAKQGARVDTRLPITLAILSRILSAANIITDSPYEAMCSVAF 356


>SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)
          Length = 951

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 425 RCPPGRTSP*NPARGRSLVLEFFDVAAALKSQRSRVTLC 309
           RCPPGR  P  P + + LV   FD+   +K + S + +C
Sbjct: 85  RCPPGRGGPILPVKTK-LVPSLFDIDLEVK-KGSLIGIC 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,839,326
Number of Sequences: 59808
Number of extensions: 405093
Number of successful extensions: 1112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)