Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e12
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical... 97 7e-21
Z74042-14|CAE11313.1| 311|Caenorhabditis elegans Hypothetical p... 33 0.13
AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical ... 30 1.6
AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical ... 30 1.6
AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical ... 30 1.6
Z81489-2|CAB04011.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF039050-1|AAC47934.2| 344|Caenorhabditis elegans Seven tm rece... 29 3.7
AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine re... 29 3.7
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.7
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.7
Z71185-12|CAA94906.3| 460|Caenorhabditis elegans Hypothetical p... 28 6.4
AL021503-2|CAA16421.1| 320|Caenorhabditis elegans Hypothetical ... 28 6.4
Z70753-3|CAA94768.1| 343|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z49911-1|CAA90131.2| 647|Caenorhabditis elegans Hypothetical pr... 27 8.5
AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine re... 27 8.5
AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine re... 27 8.5
>AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical
protein Y37D8A.17 protein.
Length = 271
Score = 97.5 bits (232), Expect = 7e-21
Identities = 50/140 (35%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Frame = +2
Query: 167 PPKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFNN-PV-SAFYKALLANAATS 340
PP ++ ++ AN ++ L+ RV+TV + Y+ P P SA+YK A+AAT
Sbjct: 31 PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90
Query: 341 ALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAA 520
ALRLH RI + +L+ F+ R +EDS HYL YS++F+ P + +P+ ++A LHA
Sbjct: 91 ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHAC 149
Query: 521 SYSLTILDTLGQNSLWVARL 580
++ IL G S + +L
Sbjct: 150 TFMTKILRETGHTSSIIPKL 169
>Z74042-14|CAE11313.1| 311|Caenorhabditis elegans Hypothetical
protein T11F9.18 protein.
Length = 311
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +2
Query: 287 NNPVSAFYKALLANAATSAL-RLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNV 463
+ P++A Y L A+ L +L + R ISL R+F+ +++ + H +F S+
Sbjct: 201 SQPLAAVYFGLSVYASKLGLQKLKASLSQRTISLQRNFLHSLYIQTAVHVIFISIPLGIF 260
Query: 464 VPNLLILVPIFLFALLHAASYSLTILDTL 550
+ +I +P + +L A L TL
Sbjct: 261 FLSFIIWIPSNMSYILTAMCTQHGSLSTL 289
>AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical
protein Y66H1B.2c protein.
Length = 950
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 337 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 450
F R L LA FHG+ +P G+ F + TH
Sbjct: 628 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 665
>AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical
protein Y66H1B.2b protein.
Length = 899
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 337 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 450
F R L LA FHG+ +P G+ F + TH
Sbjct: 577 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 614
>AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical
protein Y66H1B.2a protein.
Length = 897
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 337 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 450
F R L LA FHG+ +P G+ F + TH
Sbjct: 575 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 612
>Z81489-2|CAB04011.2| 360|Caenorhabditis elegans Hypothetical
protein C55A1.3 protein.
Length = 360
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 434 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEF 601
LFY+L+F ++P +L+ +P L L S+ L S+++ +L L F
Sbjct: 260 LFYALVFQTLIPVILMHIPASLGFLFSMFGQSILFFGELPTFSVFLYPILDPLPNF 315
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 124 NQYGRSKSASRRHWSTKRHPSLESSHHCQ*NRRSSLGGPR 243
+ YGR ++SRR + ++ PS S+ H N R+SL P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199
>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
protein B0240.3 protein.
Length = 1093
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 334 DFSAAATSKNSSTRDLPLAGFHGEV 408
+F +TS +D+PL GFHGE+
Sbjct: 317 NFVLNSTSSFEPLKDVPLCGFHGEI 341
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 103 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 207
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 103 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 207
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>AF039050-1|AAC47934.2| 344|Caenorhabditis elegans Seven tm
receptor protein 247 protein.
Length = 344
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 434 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEF 601
LFY+L+F ++P +L+ +P L+ S+ + L S+++ +L L F
Sbjct: 245 LFYALVFQTLIPVILMHIPASFGFLVSIFGNSIQLFGQLPTFSIFLFPMLDPLPNF 300
>AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine
receptor, class x protein5 protein.
Length = 306
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 440 YSLIFMNVVPNLLILVPIFLFALL--HAASYSLTILDTLGQ-NSLWVARLLISLVEFQSR 610
+ L F+++ NLLI +P+F FA ++ Y + + + L+VA SL R
Sbjct: 12 FCLSFVSICLNLLIFIPVFRFAFFGKRSSIYLIAFFNIISDLQQLFVACFHSSLSIIFGR 71
Query: 611 NILPG 625
+L G
Sbjct: 72 YVLSG 76
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 103 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 207
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 103 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 207
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>Z71185-12|CAA94906.3| 460|Caenorhabditis elegans Hypothetical
protein C35A5.3 protein.
Length = 460
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 472 FVNIGANLFICAATRRFVFLDYP*YSWSK 558
FV++G ++FI A F+F D P SW++
Sbjct: 417 FVSLGVSMFIANAISVFIFTDQP-ASWTE 444
>AL021503-2|CAA16421.1| 320|Caenorhabditis elegans Hypothetical
protein Y68A4A.3 protein.
Length = 320
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 434 LFYSLIFMNVVPNLLILVP 490
LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257
>Z70753-3|CAA94768.1| 343|Caenorhabditis elegans Hypothetical
protein F40F9.4 protein.
Length = 343
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LFYSLIFMNVVPNLLILVPIFLFAL 508
LFYSL+ ++P +L+ +PI ++ L
Sbjct: 241 LFYSLVLQTLIPFVLMHIPITIYYL 265
>Z49911-1|CAA90131.2| 647|Caenorhabditis elegans Hypothetical
protein M28.1 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 246 SPCCVPLDTCSHCLTIQCRHSTKRYSRTLRLQ 341
SP C PL TC+ C + R T+R + ++RL+
Sbjct: 233 SPDCPPLTTCAPCACEERR--TRRATNSIRLE 262
>AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine
receptor, class n protein1 protein.
Length = 361
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 419 DSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASY 526
++ +L +F N++P ++I P+FL A SY
Sbjct: 247 ETHRHLTLLALFQNLIPAVVIAFPVFLVAFSFVMSY 282
>AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine
receptor, class x protein6 protein.
Length = 293
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 440 YSLIFMNVVPNLLILVPIFLFALLHAAS--YSLTILDTLGQ-NSLWVARLLISLVEFQSR 610
+ L F+++ NLLI +P+F FA S Y + + + L+VA SL R
Sbjct: 12 FCLSFVSICLNLLIFIPVFRFAFFGKKSSIYLIAFFNIISDLLQLFVACFHSSLSIIFGR 71
Query: 611 NILPG 625
+L G
Sbjct: 72 YVLTG 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,627,396
Number of Sequences: 27780
Number of extensions: 301024
Number of successful extensions: 1144
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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