Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e09
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0424 - 16957793-16958089,16958215-16958601,16958737-169597...    29   2.2  
07_03_0426 + 18075192-18075375,18075733-18076040                       29   3.0  
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050...    28   3.9  
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    27   6.8  

>08_02_0424 -
           16957793-16958089,16958215-16958601,16958737-16959735,
           16959840-16959994,16960082-16960169,16960241-16960344,
           16960424-16960646,16960839-16960923,16961006-16961397,
           16962841-16963005
          Length = 964

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 329 DCVKVQITPEICINFLKQIKTFGLCNVQI 243
           DC    I     ++FL+Q+ TFGLC V++
Sbjct: 418 DCGDRVIADGTLLDFLRQVSTFGLCLVRL 446


>07_03_0426 + 18075192-18075375,18075733-18076040
          Length = 163

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 9   LCTWPVLTLSNIE-IIPNRGSAIN 77
           L TW   TL+ I+ +IPNRGSAI+
Sbjct: 84  LTTWSQPTLAGIKLVIPNRGSAIS 107


>03_05_0101 -
           20803546-20803800,20803907-20804700,20804788-20805042,
           20805143-20805263,20805716-20805768,20805979-20806239,
           20806734-20806784,20806900-20807148,20807257-20807479,
           20807737-20807910
          Length = 811

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 178 VNLYLTEIILNIELLQKHTTEHICTLHKPNVFICFRKL 291
           V L+ TE++  I  +  H  E I T+H   VFI  + L
Sbjct: 571 VGLFYTELVQGIPPIFPHLIEKIPTIHSVIVFISMKHL 608


>03_05_0105 -
           20861130-20861384,20861472-20862262,20862364-20862618,
           20862713-20862827,20862959-20863011,20863113-20863373,
           20863699-20863749,20863863-20864114,20864504-20864726,
           20865317-20865460
          Length = 799

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 178 VNLYLTEIILNIELLQKHTTEHICTLHKPNVFICFRKL 291
           V L+ TE++  I  +  H  E I T+H   VFI  + L
Sbjct: 560 VALFYTELVQGIPPIFPHLIEKIPTIHSVLVFISIKHL 597


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,684
Number of Sequences: 37544
Number of extensions: 186547
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)