Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e09
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    28   4.6  
U88178-7|ABA03111.1|  439|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AC006676-2|AAK71382.3|  439|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z78239-2|CAI79140.1|  189|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = +3

Query: 9    LCTWPVLTLSNIEIIPNRGSAIN 77
            LC WP++ +  ++++ +RG+ ++
Sbjct: 1663 LCNWPIINMKIMQLVDSRGNCVD 1685


>U88178-7|ABA03111.1|  439|Caenorhabditis elegans Hypothetical
           protein W09C3.1 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 234 YRTYLYIT*AKCLYLFQKIDTYLWCNLNFDTIILMVE*YVCIYNIFVVSCLHMF 395
           Y+ Y YI    C    QKI   +  N N DTII      VCI  +  +  +H +
Sbjct: 98  YKDYRYIVMTLCGPDLQKIAELMNNNFNQDTII-----RVCIRTLLAIKTMHEY 146


>AC006676-2|AAK71382.3|  439|Caenorhabditis elegans Hypothetical
           protein M04F3.3 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 234 YRTYLYIT*AKCLYLFQKIDTYLWCNLNFDTIILMVE*YVCIYNIFVVSCLHMF 395
           Y+ Y YI    C    QKI   +  N N DTII      VCI  +  +  +H +
Sbjct: 98  YKDYRYIVMTLCGPDLQKIAELMNNNFNQDTII-----RVCIRTLLAIKTMHEY 146


>Z78239-2|CAI79140.1|  189|Caenorhabditis elegans Hypothetical
           protein C30G7.2 protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -3

Query: 213 NI*NYFSKVKVNTSQVLSHSFIINVMFLLTYSRF*YVPHIH 91
           NI + F++V + T  +L H FI++    ++ S F Y P+IH
Sbjct: 149 NIKDVFNRV-IQTDVIL-HLFILSFFHYVSLSYFHYFPNIH 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,974,128
Number of Sequences: 27780
Number of extensions: 218021
Number of successful extensions: 373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)