Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e09
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 436 VRFFSTEAFSLHKTNEILQKLKFV 507
           VRF +    +  K NE+++  KFV
Sbjct: 454 VRFIAQHIKNADKDNEVIEDWKFV 477


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 321 QSSNYTRDMYQFSET 277
           Q++NY  D+YQ++ T
Sbjct: 4   QTANYYGDVYQWNHT 18


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 262 AYVMYKYVL*CVFV 221
           AYV +K V  C+FV
Sbjct: 60  AYVRFKLVTDCIFV 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,265
Number of Sequences: 438
Number of extensions: 2653
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)