Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e09
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box prote...    33   0.087
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea...    27   7.6  

>At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box protein
           EGM1, Eucalyptus grandis, EMBL:AF029975; contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 345

 Score = 33.5 bits (73), Expect = 0.087
 Identities = 18/59 (30%), Positives = 38/59 (64%)
 Frame = +1

Query: 55  LIEAQQSILIKYMYMWDILKSRISQ*EHNINYK*M**HLTCVNLYLTEIILNIELLQKH 231
           L+ A Q + ++  +M+D ++ ++SQ  +  + K +   L+C+NLYL ++   IE+L++H
Sbjct: 90  LVGANQELQVR-RFMFDCVEGKMSQ--YRYDAKDLQDLLSCINLYLDQLNGRIEILKEH 145


>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
           family protein similar to Will die slowly protein
           (SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
           PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
          Length = 330

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 205 LNIELLQKHTTEHICTLHKPNVFIC 279
           L I   +KH T+ +C  H P+  IC
Sbjct: 59  LKITYHKKHGTDRVCFTHHPSSLIC 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,927
Number of Sequences: 28952
Number of extensions: 175776
Number of successful extensions: 272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)