Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e08
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    30   0.014
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   1.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 0.014
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 587 IVILSNFNEIFLN*YFRWTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*FL 408
           + I  N + +FL     +TVH  F   F+ + VH L  T    Y  I       +Y+ F+
Sbjct: 62  VSITFNVHLLFLLCSGYFTVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFI 121

Query: 407 YICVH 393
              VH
Sbjct: 122 IFTVH 126



 Score = 29.1 bits (62), Expect = 0.032
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = -2

Query: 521 HFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*FLYICVHPRSYPYQSGYSFSKTFI 342
           +F   F+ + VH+L   CI  ++         YYF   +I            Y F   FI
Sbjct: 115 YFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFI 174

Query: 341 EF-LHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLHSYF 222
            F +HL        +     F+  H L+ + L Y+ LH  F
Sbjct: 175 IFTMHLL-------FCCAFIFFNMHLLFLLCLDYFTLHLLF 208



 Score = 28.3 bits (60), Expect = 0.055
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = -2

Query: 545 YFRWTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*FLYICVHPRSYPYQSG 366
           Y+ + +H  F   F+ + +H+L   CI  +          YYF   +I      Y   S 
Sbjct: 259 YYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIFPTHFYCAFSL 318

Query: 365 YSFSKTF 345
           Y    TF
Sbjct: 319 YPLKSTF 325



 Score = 25.0 bits (52), Expect = 0.52
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
 Frame = -2

Query: 536 WTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*--FLYICVHPRSYPYQ--- 372
           +T+H  F   F+ + +H+L   C+  +          YYF   F+   +H   Y      
Sbjct: 176 FTMHLLFCCAFIFFNMHLLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIIL 235

Query: 371 -SGYSFSKTFIEF-LHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLHSYF 222
              Y F   FI F +HL             +FYY H L+      + +H  F
Sbjct: 236 LCIYYFYYAFILFTVHLLLLV------CIYYFYYMHLLFCCAFIIFTMHLLF 281


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 503 VTYCVHILASTCISIYLSIFCSEQVRYY 420
           + + +  +  TC  IY+ I+C E +R++
Sbjct: 47  ICFLLSTILGTCWIIYVRIYCKE-IRFF 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,524
Number of Sequences: 336
Number of extensions: 2936
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)