Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e08
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   1.7  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.9  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    26   3.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   5.1  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   6.7  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   6.7  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.9  
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    25   8.9  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 80  SKLHQTQNPFEISDKPSKIIGEEENGISAEITERD 184
           SK+ ++QN FE   K  KI    E GI A  TE++
Sbjct: 49  SKITKSQNLFERHGKNKKIAVNSEYGIIAVATEKN 83


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = +3

Query: 240 IIREDYMVEAMEIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELK 419
           I+R DY V     +   C++I A+F    ++K  +   A+ +   I +        Q LK
Sbjct: 468 ILRNDYYVYLSHNLLTVCNIIKAQF---QRLKNANSIPAKQVENYITLVNSASLSKQYLK 524

Query: 420 IISDLLTAKYGKVYADA 470
            I D ++++  +V+A A
Sbjct: 525 SIVDGVSSRLEEVFAFA 541


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 261 VEAMEIVEMYCDLI-LARFGLVTQMKELDEGLAEAISTLIWVAPRM 395
           ++A  I+ M   L+ LA FG+  Q++ L +   + + T  W+AP +
Sbjct: 128 IKAANILTMKDGLVKLADFGVSGQLESLRDKNDDFVGTPFWMAPEV 173


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 501 HLLCSHSRLYMHQHIPFHILQ*ASQILFLILVHLCAS 391
           HL     + Y   H P++ L  A Q L +IL+ LC+S
Sbjct: 730 HLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSS 766


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 527 HRHFVLQFVTYCVHILASTCISIYL 453
           H +F    +T C H   S CI  YL
Sbjct: 33  HEYFRAPLITSCSHTFCSFCIRDYL 57


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 404 ICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSL 264
           I ++P  +P +  Y  SK F   L + + T+P        +  FH L
Sbjct: 195 IMLYPEEHPER--YKLSKAFANILGIREGTRPDIVSYLWQYIKFHRL 239


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 536 WTVHRHFVLQFVTYCVHILASTCISI-YLSIF---CSEQVRYYF 417
           W    +F+  F  +C  IL +TCI +  ++++   CSE   +++
Sbjct: 513 WFHPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCSENYNWWW 556


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 413  FLYICVHPRSYP---YQSGYSFSKTFIEFL 333
            FL++CV    +    Y  G+SFSKT + F+
Sbjct: 1525 FLFVCVDVVVFEVLGYLEGWSFSKTLLGFV 1554


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 168 KSRKEIAEYIASGKSERAKIRVEHIIREDYMVEAMEIV 281
           KS    AE   +G  E AKI  E I+ +DY  + +  +
Sbjct: 238 KSAVRSAEDELNGAIEHAKILYEQILNKDYNTDLLRSI 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,665
Number of Sequences: 5004
Number of extensions: 48608
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)