Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e08
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17426| Best HMM Match : DUF292 (HMM E-Value=0) 208 3e-54
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) 29 2.3
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 29 3.1
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) 28 5.4
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 28 7.1
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 28 7.1
SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098) 28 7.1
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 27 9.4
SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27) 27 9.4
>SB_17426| Best HMM Match : DUF292 (HMM E-Value=0)
Length = 249
Score = 208 bits (508), Expect = 3e-54
Identities = 97/175 (55%), Positives = 133/175 (76%)
Frame = +3
Query: 93 KLKTHLRLAINRXXXXXXXXXXXAQKSRKEIAEYIASGKSERAKIRVEHIIREDYMVEAM 272
KLKT+LRLAINR AQK+R+EIA+Y+ +GK ERA+IRVEHIIREDY+VEA+
Sbjct: 10 KLKTNLRLAINRLKLLEKKKTELAQKARREIADYLGNGKDERARIRVEHIIREDYLVEAL 69
Query: 273 EIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELKIISDLLTAKYG 452
E++E+YCDL+LARFGL+ M DEG+ E++++LIWVAPR+ TDVQE K+I++ L K+G
Sbjct: 70 ELLELYCDLLLARFGLIETMTYCDEGMIESVTSLIWVAPRLQTDVQEFKVIAEQLGYKFG 129
Query: 453 KVYADACRGENVNTISDKLKHKMSVHSPPKILVEKYLIEIAKNYNVEYTPDEXVM 617
K +A +T++ +L K+S PPKILVE+YLIEIA+++NV++ PD VM
Sbjct: 130 KTFAHEAATNANDTVNPRLILKLSPKPPPKILVERYLIEIARSHNVQFEPDPLVM 184
>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 299 QVTVHFYYFHSLYHVVLSYYVLHSYFGTFTFT*SYVFS 186
QVT + Y + +Y + Y +++Y T+T+T +Y ++
Sbjct: 6 QVTFYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYT 43
>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
Length = 1423
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +3
Query: 396 HTDVQELKIISDLLTAKYGKVYADACRGENVNTISDKLKHKMSVHSPPKILVEKYLIEIA 575
H K + +++TA G + + G + IS + +H+PP ++ Y + A
Sbjct: 526 HQPYDSKKDLKEVITASSGNLTSPYYPGYYITDIS----YTWHIHAPPGHVIRIYFTDFA 581
Query: 576 KNYNVEYTPDEXVM 617
+V Y+ D V+
Sbjct: 582 LEEHVTYSKDNVVV 595
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -3
Query: 439 VSKSDIIFNSCTSVCILGATHIRVDIASARPSS---SSFI*VTRPNLA 305
+ +D SC+ V GAT I +D RPSS S F +T+P +A
Sbjct: 625 IGVTDATTTSCSFVKGQGATRIELDQVEVRPSSQKKSRFSLITKPAVA 672
>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
Length = 492
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 410 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVL-SYYVL 234
L++C HP + + + Y++++T LHL T+P+ ++ Y +L H+ ++
Sbjct: 57 LHLCTHPTTLMHATYYTYART---LLHLC--TQPTTLMHAPYYTYARTLLHLCTHPTTLM 111
Query: 233 HSYFGTFTFT 204
H+ + T+ T
Sbjct: 112 HAPYYTYART 121
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -2
Query: 410 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHV 255
L++C HP + + Y++++T LHL +T P+ ++ Y +L H+
Sbjct: 101 LHLCTHPTTLMHAPYYTYART---LLHL--RTHPTTLMHAPYYTYARNLLHL 147
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 83 KLHQTQNPFEISDKPSKIIGEEENGISAEITERD 184
+L + Q E ++ K++GE+E GI A ERD
Sbjct: 56 ELQENQQYIEKVEQLEKLLGEKEEGIMALADERD 89
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/116 (20%), Positives = 41/116 (35%)
Frame = -2
Query: 569 FNEIFLN*YFRWTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*FLYICVHP 390
F I + YF + H++ +T+ H SI F + ++F F I H
Sbjct: 938 FFSIITHHYFFVIITHHYIFSIITH--HYF----FSIITHHFFFSIITHHF-FFSIITHH 990
Query: 389 RSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLHSYF 222
+ + + F S T + + H Y+F + H + H YF
Sbjct: 991 FFFSIITHHYFFSIITHHFFFSIITHHFFFSIITHHYFFSIITHHYFFVIITHHYF 1046
Score = 27.5 bits (58), Expect = 9.4
Identities = 30/135 (22%), Positives = 45/135 (33%)
Frame = -2
Query: 590 NIVILSNFNEIFLN*YFRWTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*F 411
+I+ F I + YF + H+ +T+ H S Y F S +YF
Sbjct: 1021 SIITHHYFFSIITHHYFFVIITHHYFFSIITH--HFFFSIITDHY---FFSIITHHYF-- 1073
Query: 410 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLH 231
I H +P + + F S T + + H Y F H + H
Sbjct: 1074 FVIITHHYIFPIITHHDFFSIITHHYFFSIITYHYFFVIITHHYIFSIFTHHYFFSIITH 1133
Query: 230 SYFGTFTFT*SYVFS 186
Y T Y+FS
Sbjct: 1134 HY-SFVIITYHYIFS 1147
>SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098)
Length = 533
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Frame = +3
Query: 321 VTQMKELDEGLAE-AISTLIWVAPRM---HTDVQELKIISDLLTAKYGKVYA-----DAC 473
+ ++ ELDEGL E +S++ R+ H VQE + + L T Y +VY+ + C
Sbjct: 157 IKELDELDEGLIEMLLSSITREDSRLSDEHQAVQEQRTVVLLHTLAYFRVYSGLSHDELC 216
Query: 474 RGENVNTISD 503
E+ N I +
Sbjct: 217 TLESTNLIDE 226
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 131 KIIGEEENGISAEITERDC*IHSFR*K*TCQNKSGAHNKRGLHGRGY 271
K IG ++NGI A+I+ DC + C K+ A RG G+
Sbjct: 245 KSIGNKQNGIFAQISSLDCKLQD-----ACLVKNSADGSRGDRVAGF 286
>SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)
Length = 649
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/67 (14%), Positives = 29/67 (43%)
Frame = +3
Query: 240 IIREDYMVEAMEIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELK 419
++ + M +++ +++ F D + + ++W++PR+H D+ +
Sbjct: 521 VVDDASMESGKDVIASAASVVVVAFSTGFSATTYDHTIVVVAAAVVWMSPRVHLDLWNIP 580
Query: 420 IISDLLT 440
L+T
Sbjct: 581 GKDSLVT 587
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,112
Number of Sequences: 59808
Number of extensions: 343419
Number of successful extensions: 1068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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