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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e08
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17426| Best HMM Match : DUF292 (HMM E-Value=0)                     208   3e-54
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)                 29   2.3  
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)                   29   3.1  
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       28   5.4  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               28   7.1  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          28   7.1  
SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098)                 28   7.1  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  27   9.4  
SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)       27   9.4  

>SB_17426| Best HMM Match : DUF292 (HMM E-Value=0)
          Length = 249

 Score =  208 bits (508), Expect = 3e-54
 Identities = 97/175 (55%), Positives = 133/175 (76%)
 Frame = +3

Query: 93  KLKTHLRLAINRXXXXXXXXXXXAQKSRKEIAEYIASGKSERAKIRVEHIIREDYMVEAM 272
           KLKT+LRLAINR           AQK+R+EIA+Y+ +GK ERA+IRVEHIIREDY+VEA+
Sbjct: 10  KLKTNLRLAINRLKLLEKKKTELAQKARREIADYLGNGKDERARIRVEHIIREDYLVEAL 69

Query: 273 EIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELKIISDLLTAKYG 452
           E++E+YCDL+LARFGL+  M   DEG+ E++++LIWVAPR+ TDVQE K+I++ L  K+G
Sbjct: 70  ELLELYCDLLLARFGLIETMTYCDEGMIESVTSLIWVAPRLQTDVQEFKVIAEQLGYKFG 129

Query: 453 KVYADACRGENVNTISDKLKHKMSVHSPPKILVEKYLIEIAKNYNVEYTPDEXVM 617
           K +A        +T++ +L  K+S   PPKILVE+YLIEIA+++NV++ PD  VM
Sbjct: 130 KTFAHEAATNANDTVNPRLILKLSPKPPPKILVERYLIEIARSHNVQFEPDPLVM 184


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 299 QVTVHFYYFHSLYHVVLSYYVLHSYFGTFTFT*SYVFS 186
           QVT + Y +  +Y  +  Y  +++Y  T+T+T +Y ++
Sbjct: 6   QVTFYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYT 43


>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
          Length = 1423

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +3

Query: 396 HTDVQELKIISDLLTAKYGKVYADACRGENVNTISDKLKHKMSVHSPPKILVEKYLIEIA 575
           H      K + +++TA  G + +    G  +  IS    +   +H+PP  ++  Y  + A
Sbjct: 526 HQPYDSKKDLKEVITASSGNLTSPYYPGYYITDIS----YTWHIHAPPGHVIRIYFTDFA 581

Query: 576 KNYNVEYTPDEXVM 617
              +V Y+ D  V+
Sbjct: 582 LEEHVTYSKDNVVV 595


>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
          Length = 2182

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 439 VSKSDIIFNSCTSVCILGATHIRVDIASARPSS---SSFI*VTRPNLA 305
           +  +D    SC+ V   GAT I +D    RPSS   S F  +T+P +A
Sbjct: 625 IGVTDATTTSCSFVKGQGATRIELDQVEVRPSSQKKSRFSLITKPAVA 672


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -2

Query: 410 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVL-SYYVL 234
           L++C HP +  + + Y++++T    LHL   T+P+      ++ Y  +L H+      ++
Sbjct: 57  LHLCTHPTTLMHATYYTYART---LLHLC--TQPTTLMHAPYYTYARTLLHLCTHPTTLM 111

Query: 233 HSYFGTFTFT 204
           H+ + T+  T
Sbjct: 112 HAPYYTYART 121



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 410 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHV 255
           L++C HP +  +   Y++++T    LHL  +T P+      ++ Y  +L H+
Sbjct: 101 LHLCTHPTTLMHAPYYTYART---LLHL--RTHPTTLMHAPYYTYARNLLHL 147


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 83  KLHQTQNPFEISDKPSKIIGEEENGISAEITERD 184
           +L + Q   E  ++  K++GE+E GI A   ERD
Sbjct: 56  ELQENQQYIEKVEQLEKLLGEKEEGIMALADERD 89


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 24/116 (20%), Positives = 41/116 (35%)
 Frame = -2

Query: 569  FNEIFLN*YFRWTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*FLYICVHP 390
            F  I  + YF   +  H++   +T+  H       SI    F    + ++F F  I  H 
Sbjct: 938  FFSIITHHYFFVIITHHYIFSIITH--HYF----FSIITHHFFFSIITHHF-FFSIITHH 990

Query: 389  RSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLHSYF 222
              +   + + F          S  T    + +  H Y+F  + H      + H YF
Sbjct: 991  FFFSIITHHYFFSIITHHFFFSIITHHFFFSIITHHYFFSIITHHYFFVIITHHYF 1046



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 30/135 (22%), Positives = 45/135 (33%)
 Frame = -2

Query: 590  NIVILSNFNEIFLN*YFRWTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*F 411
            +I+    F  I  + YF   +  H+    +T+  H   S     Y   F S    +YF  
Sbjct: 1021 SIITHHYFFSIITHHYFFVIITHHYFFSIITH--HFFFSIITDHY---FFSIITHHYF-- 1073

Query: 410  LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLH 231
              I  H   +P  + + F          S  T    + +  H Y F    H      + H
Sbjct: 1074 FVIITHHYIFPIITHHDFFSIITHHYFFSIITYHYFFVIITHHYIFSIFTHHYFFSIITH 1133

Query: 230  SYFGTFTFT*SYVFS 186
             Y      T  Y+FS
Sbjct: 1134 HY-SFVIITYHYIFS 1147


>SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098)
          Length = 533

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
 Frame = +3

Query: 321 VTQMKELDEGLAE-AISTLIWVAPRM---HTDVQELKIISDLLTAKYGKVYA-----DAC 473
           + ++ ELDEGL E  +S++     R+   H  VQE + +  L T  Y +VY+     + C
Sbjct: 157 IKELDELDEGLIEMLLSSITREDSRLSDEHQAVQEQRTVVLLHTLAYFRVYSGLSHDELC 216

Query: 474 RGENVNTISD 503
             E+ N I +
Sbjct: 217 TLESTNLIDE 226


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 131 KIIGEEENGISAEITERDC*IHSFR*K*TCQNKSGAHNKRGLHGRGY 271
           K IG ++NGI A+I+  DC +        C  K+ A   RG    G+
Sbjct: 245 KSIGNKQNGIFAQISSLDCKLQD-----ACLVKNSADGSRGDRVAGF 286


>SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)
          Length = 649

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/67 (14%), Positives = 29/67 (43%)
 Frame = +3

Query: 240 IIREDYMVEAMEIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELK 419
           ++ +  M    +++     +++  F         D  +    + ++W++PR+H D+  + 
Sbjct: 521 VVDDASMESGKDVIASAASVVVVAFSTGFSATTYDHTIVVVAAAVVWMSPRVHLDLWNIP 580

Query: 420 IISDLLT 440
               L+T
Sbjct: 581 GKDSLVT 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,112
Number of Sequences: 59808
Number of extensions: 343419
Number of successful extensions: 1068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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