BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e08 (624 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17426| Best HMM Match : DUF292 (HMM E-Value=0) 208 3e-54 SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) 29 2.3 SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 29 3.1 SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) 28 5.4 SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 28 7.1 SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 28 7.1 SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098) 28 7.1 SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 27 9.4 SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27) 27 9.4 >SB_17426| Best HMM Match : DUF292 (HMM E-Value=0) Length = 249 Score = 208 bits (508), Expect = 3e-54 Identities = 97/175 (55%), Positives = 133/175 (76%) Frame = +3 Query: 93 KLKTHLRLAINRXXXXXXXXXXXAQKSRKEIAEYIASGKSERAKIRVEHIIREDYMVEAM 272 KLKT+LRLAINR AQK+R+EIA+Y+ +GK ERA+IRVEHIIREDY+VEA+ Sbjct: 10 KLKTNLRLAINRLKLLEKKKTELAQKARREIADYLGNGKDERARIRVEHIIREDYLVEAL 69 Query: 273 EIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELKIISDLLTAKYG 452 E++E+YCDL+LARFGL+ M DEG+ E++++LIWVAPR+ TDVQE K+I++ L K+G Sbjct: 70 ELLELYCDLLLARFGLIETMTYCDEGMIESVTSLIWVAPRLQTDVQEFKVIAEQLGYKFG 129 Query: 453 KVYADACRGENVNTISDKLKHKMSVHSPPKILVEKYLIEIAKNYNVEYTPDEXVM 617 K +A +T++ +L K+S PPKILVE+YLIEIA+++NV++ PD VM Sbjct: 130 KTFAHEAATNANDTVNPRLILKLSPKPPPKILVERYLIEIARSHNVQFEPDPLVM 184 >SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 93 Score = 30.3 bits (65), Expect = 1.3 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = -2 Query: 299 QVTVHFYYFHSLYHVVLSYYVLHSYFGTFTFT*SYVFS 186 QVT + Y + +Y + Y +++Y T+T+T +Y ++ Sbjct: 6 QVTFYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYT 43 >SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) Length = 1423 Score = 29.5 bits (63), Expect = 2.3 Identities = 17/74 (22%), Positives = 33/74 (44%) Frame = +3 Query: 396 HTDVQELKIISDLLTAKYGKVYADACRGENVNTISDKLKHKMSVHSPPKILVEKYLIEIA 575 H K + +++TA G + + G + IS + +H+PP ++ Y + A Sbjct: 526 HQPYDSKKDLKEVITASSGNLTSPYYPGYYITDIS----YTWHIHAPPGHVIRIYFTDFA 581 Query: 576 KNYNVEYTPDEXVM 617 +V Y+ D V+ Sbjct: 582 LEEHVTYSKDNVVV 595 >SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) Length = 2182 Score = 29.1 bits (62), Expect = 3.1 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -3 Query: 439 VSKSDIIFNSCTSVCILGATHIRVDIASARPSS---SSFI*VTRPNLA 305 + +D SC+ V GAT I +D RPSS S F +T+P +A Sbjct: 625 IGVTDATTTSCSFVKGQGATRIELDQVEVRPSSQKKSRFSLITKPAVA 672 >SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) Length = 492 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = -2 Query: 410 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVL-SYYVL 234 L++C HP + + + Y++++T LHL T+P+ ++ Y +L H+ ++ Sbjct: 57 LHLCTHPTTLMHATYYTYART---LLHLC--TQPTTLMHAPYYTYARTLLHLCTHPTTLM 111 Query: 233 HSYFGTFTFT 204 H+ + T+ T Sbjct: 112 HAPYYTYART 121 Score = 27.5 bits (58), Expect = 9.4 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = -2 Query: 410 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHV 255 L++C HP + + Y++++T LHL +T P+ ++ Y +L H+ Sbjct: 101 LHLCTHPTTLMHAPYYTYART---LLHL--RTHPTTLMHAPYYTYARNLLHL 147 >SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) Length = 762 Score = 27.9 bits (59), Expect = 7.1 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 83 KLHQTQNPFEISDKPSKIIGEEENGISAEITERD 184 +L + Q E ++ K++GE+E GI A ERD Sbjct: 56 ELQENQQYIEKVEQLEKLLGEKEEGIMALADERD 89 >SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) Length = 1163 Score = 27.9 bits (59), Expect = 7.1 Identities = 24/116 (20%), Positives = 41/116 (35%) Frame = -2 Query: 569 FNEIFLN*YFRWTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*FLYICVHP 390 F I + YF + H++ +T+ H SI F + ++F F I H Sbjct: 938 FFSIITHHYFFVIITHHYIFSIITH--HYF----FSIITHHFFFSIITHHF-FFSIITHH 990 Query: 389 RSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLHSYF 222 + + + F S T + + H Y+F + H + H YF Sbjct: 991 FFFSIITHHYFFSIITHHFFFSIITHHFFFSIITHHYFFSIITHHYFFVIITHHYF 1046 Score = 27.5 bits (58), Expect = 9.4 Identities = 30/135 (22%), Positives = 45/135 (33%) Frame = -2 Query: 590 NIVILSNFNEIFLN*YFRWTVHRHFVLQFVTYCVHILASTCISIYLSIFCSEQVRYYF*F 411 +I+ F I + YF + H+ +T+ H S Y F S +YF Sbjct: 1021 SIITHHYFFSIITHHYFFVIITHHYFFSIITH--HFFFSIITDHY---FFSIITHHYF-- 1073 Query: 410 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLH 231 I H +P + + F S T + + H Y F H + H Sbjct: 1074 FVIITHHYIFPIITHHDFFSIITHHYFFSIITYHYFFVIITHHYIFSIFTHHYFFSIITH 1133 Query: 230 SYFGTFTFT*SYVFS 186 Y T Y+FS Sbjct: 1134 HY-SFVIITYHYIFS 1147 >SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098) Length = 533 Score = 27.9 bits (59), Expect = 7.1 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 9/70 (12%) Frame = +3 Query: 321 VTQMKELDEGLAE-AISTLIWVAPRM---HTDVQELKIISDLLTAKYGKVYA-----DAC 473 + ++ ELDEGL E +S++ R+ H VQE + + L T Y +VY+ + C Sbjct: 157 IKELDELDEGLIEMLLSSITREDSRLSDEHQAVQEQRTVVLLHTLAYFRVYSGLSHDELC 216 Query: 474 RGENVNTISD 503 E+ N I + Sbjct: 217 TLESTNLIDE 226 >SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) Length = 3369 Score = 27.5 bits (58), Expect = 9.4 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +2 Query: 131 KIIGEEENGISAEITERDC*IHSFR*K*TCQNKSGAHNKRGLHGRGY 271 K IG ++NGI A+I+ DC + C K+ A RG G+ Sbjct: 245 KSIGNKQNGIFAQISSLDCKLQD-----ACLVKNSADGSRGDRVAGF 286 >SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27) Length = 649 Score = 27.5 bits (58), Expect = 9.4 Identities = 10/67 (14%), Positives = 29/67 (43%) Frame = +3 Query: 240 IIREDYMVEAMEIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELK 419 ++ + M +++ +++ F D + + ++W++PR+H D+ + Sbjct: 521 VVDDASMESGKDVIASAASVVVVAFSTGFSATTYDHTIVVVAAAVVWMSPRVHLDLWNIP 580 Query: 420 IISDLLT 440 L+T Sbjct: 581 GKDSLVT 587 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,638,112 Number of Sequences: 59808 Number of extensions: 343419 Number of successful extensions: 1068 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 835 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 979 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1548368000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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