Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e08
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   2.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   4.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.8  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 NVNTISDKLKHKMSVHSPP 539
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 NVNTISDKLKHKMSVHSPP 539
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 NVNTISDKLKHKMSVHSPP 539
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 NVNTISDKLKHKMSVHSPP 539
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 NVNTISDKLKHKMSVHSPP 539
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 NVNTISDKLKHKMSVHSPP 539
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 119 DKPSKIIGEEENGISAEITE 178
           D    I G+EENG+++E T+
Sbjct: 81  DSIHSIDGDEENGLTSESTD 100


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 NVNTISDKLKHKMSVHSPP 539
           NV  I D ++HK S  +PP
Sbjct: 412 NVLDIDDDIRHKNSAANPP 430


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 NVNTISDKLKHKMSVHSPP 539
           NV  I D ++HK S  +PP
Sbjct: 412 NVLDIDDDIRHKNSAANPP 430


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = -1

Query: 531 CAQ-TFCASICHLLCSHSRLYMH 466
           CA  T+    CH L  H R Y H
Sbjct: 47  CANCTYATKYCHSLKLHLRKYSH 69


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 134 IIGEEENGISAEITE 178
           I G+EENG+++E T+
Sbjct: 115 IDGDEENGLTSESTD 129


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 224 NKSGAHNKRGLHG 262
           N++G H   GLHG
Sbjct: 130 NQTGLHGLHGLHG 142


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 580 FLAISMRYFSTNILGGLCTDI 518
           FL   + +F+ NI+  +CT +
Sbjct: 628 FLICWLPFFTCNIMDAICTKL 648


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,019
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)