BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e07 (475 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 28 0.63 SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 1.1 SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 4.5 SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 5.9 >SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit Bgs2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1894 Score = 28.3 bits (60), Expect = 0.63 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 196 WSNSFGKHFVCSNSWFHFIGSNVIRVEVVFNFLSGVNVLVFDS 68 W +F K F S SWFH + +N R+ V+ +F + VF+S Sbjct: 465 WKKAFYKTFYESRSWFHLV-TNFNRIWVI-HFTTYWYYTVFNS 505 >SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit Bgs4|Schizosaccharomyces pombe|chr 3|||Manual Length = 1955 Score = 27.5 bits (58), Expect = 1.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 196 WSNSFGKHFVCSNSWFHFIGSNVIRVEVV 110 W+ +F K + S SWFH I +N R+ V+ Sbjct: 495 WNRAFYKTYYESRSWFHLI-TNFNRIWVI 522 >SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |Schizosaccharomyces pombe|chr 3|||Manual Length = 660 Score = 25.4 bits (53), Expect = 4.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -2 Query: 261 FSLAAKSISRLDGPPASSKS 202 FS+A K +S + GPP + K+ Sbjct: 220 FSIAVKELSLIHGPPGTGKT 239 >SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 514 Score = 25.0 bits (52), Expect = 5.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 249 AKSISRLDGPPASSKSIYGPTPSGNISSAAIVG 151 A+SI+R + AS IY P+ ++S A+VG Sbjct: 71 ARSITRPES--ASESKIYAPSARSSLSLEAVVG 101 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,698,087 Number of Sequences: 5004 Number of extensions: 30578 Number of successful extensions: 71 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 71 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 182448900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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