Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e07
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1083 - 34403769-34403774,34403819-34403918,34404235-344043...    29   1.4  
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853...    29   2.5  
07_03_0794 + 21562995-21563004,21564151-21565799                       28   4.4  
07_03_0574 - 19629875-19631032                                         28   4.4  
03_01_0564 - 4176177-4178096                                           27   7.7  

>01_06_1083 -
           34403769-34403774,34403819-34403918,34404235-34404318,
           34404427-34404506,34404614-34404707,34404796-34404887,
           34405335-34405425,34405617-34405719,34405919-34406008,
           34406154-34406235,34406434-34406481,34406601-34406897,
           34406992-34407078,34408047-34408247,34408329-34408533,
           34409362-34410152
          Length = 816

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 158 IAADEMFPEGVGPYMDLEEAGGPSNLLMDLAANEKAV 268
           +AAD   P    P    E A  PS LL +LA  +KAV
Sbjct: 34  VAADHTPPPPPSPSSPPEPANSPSRLLRELAERKKAV 70


>02_04_0191 -
           20783143-20784365,20784453-20784597,20784977-20785345,
           20786164-20786250,20786405-20786603,20786733-20786818
          Length = 702

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 225 GPPASSKSIYGPTPSGNISSAAIVGFI 145
           GPPA++K    P P G +SS  IVG +
Sbjct: 608 GPPATAKKTKAPVPQGGMSS-GIVGVL 633


>07_03_0794 + 21562995-21563004,21564151-21565799
          Length = 552

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 66  RESKTSTFTPDKKLNTTSTRITFEPIK*NQLLLQ 167
           RE +T    PD    TTST+  FE IK  QL+ Q
Sbjct: 99  REIETVLMAPDTDDATTSTKHEFEEIKPAQLVRQ 132


>07_03_0574 - 19629875-19631032
          Length = 385

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 234 RLDGPPASSKSIYGPTPSGNISSAAIVG 151
           RL GPP +   I  P P   +++ A+VG
Sbjct: 160 RLPGPPYADDGIGRPLPGSRVTALAVVG 187


>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 172 FVCSNSWFHFIGSNVIRVEVVFNFLSGVN 86
           FV S  WF+ I + ++ + V F  + G+N
Sbjct: 478 FVMSIIWFYIIANELVALLVAFGVILGIN 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,836
Number of Sequences: 37544
Number of extensions: 171649
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)