Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e07
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_59189| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)             28   4.5  

>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 113  YFYSNYV*TYKMKPTIAAD--EMFPEGVGPYMDL 208
            Y Y NY   YK  P++AA      P+GVG Y+DL
Sbjct: 2829 YVYYNY--EYKQVPSLAAPFATAIPKGVGRYLDL 2860


>SB_59189| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
          Length = 532

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 39  DCLIYCKYYRESKTSTFTPDKKLNTTSTRITFEPIK*NQLLLQTKCFP 182
           DC    K+YR +     TPD KL   S R  F     N L LQ   FP
Sbjct: 26  DCFTDTKWYRTNDRCLLTPDGKLK-MSKRTVF-----NNLWLQDPLFP 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,080,687
Number of Sequences: 59808
Number of extensions: 201604
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)