Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e07
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    31   0.30 
At2g45930.1 68415.m05711 expressed protein contains Pfam profile...    29   1.6  
At4g33900.1 68417.m04810 kelch repeat-containing F-box family pr...    28   3.7  
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam...    28   3.7  
At3g17470.1 68416.m02232 RelA/SpoT domain-containing protein / c...    27   8.6  
At2g22230.1 68415.m02638 beta-hydroxyacyl-ACP dehydratase, putat...    27   8.6  

>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 267 TAFSLAAKSISRLDGPPASSKSIYGPTPSGNISSAAIVG 151
           T  S A  S++ L  PP +S S   P PSG   +AAI G
Sbjct: 196 TPISFANNSLTDLPEPPPTSTSPTPPPPSGGQMTAAIAG 234


>At2g45930.1 68415.m05711 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 239

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 105 LNTTSTRITFEPIK*NQLLLQTKCFPKEL 191
           ++ TST   F+P+K ++++++ K FP EL
Sbjct: 54  IDVTSTIHYFDPVKEDEIIVRDKAFPMEL 82


>At4g33900.1 68417.m04810 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 379

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 219 PASSKSIYGPTPSGNISSAAIVGFIL 142
           P SSK +  P  S N +SAA+ GF++
Sbjct: 87  PNSSKKVLVPISSPNFTSAALPGFVV 112


>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 233

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 383 LCLLLKFTFNFYLFI 339
           LC+LL+F FNF++F+
Sbjct: 15  LCVLLRFDFNFWVFV 29


>At3g17470.1 68416.m02232 RelA/SpoT domain-containing protein /
           calcium-binding EF-hand family protein contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain, Pfam
           profile PF04607: Region found in RelA / SpoT proteins
          Length = 583

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/69 (23%), Positives = 27/69 (39%)
 Frame = +2

Query: 65  QGIKDKHIYTRQKVKYYFYSNYV*TYKMKPTIAADEMFPEGVGPYMDLEEAGGPSNLLMD 244
           + +KD  +        Y    Y   Y M   +  D   PE V   + L     P++++ D
Sbjct: 290 RSLKDDLVLAEMVNDVYIKGRYKSRYSMMKKLLRDGRKPEEVNDVLGLRVILMPNSVVND 349

Query: 245 LAANEKAVH 271
           +   EKA +
Sbjct: 350 VEVGEKACY 358


>At2g22230.1 68415.m02638 beta-hydroxyacyl-ACP dehydratase, putative
           similar to beta-hydroxyacyl-ACP dehydratase from
           Toxoplasma gondii [GI:3850997]; contains Pfam profile
           PF01377 Thioester dehydratase
          Length = 220

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 362 TFNFYLFINSDLVTSNHHHQ 303
           T N  LF++SD +  +HHHQ
Sbjct: 4   TSNSVLFLSSDSLIHHHHHQ 23


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,890
Number of Sequences: 28952
Number of extensions: 149873
Number of successful extensions: 355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)