Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e06
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.16c |spt4||transcription elongation factor complex subu... 83 2e-17
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 30 0.20
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 27 1.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 1.9
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 3.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 4.3
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz... 25 7.5
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |... 25 7.5
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 10.0
>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
Spt4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 105
Score = 83.4 bits (197), Expect = 2e-17
Identities = 40/99 (40%), Positives = 57/99 (57%)
Frame = +2
Query: 164 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 343
RACL+C ++ F +GC N D+V TS F+G++A+M+P +SWV +
Sbjct: 10 RACLICGIVLPHSVFANKGCPN--------DGVDDVETFTSPVFEGIMAMMSPTESWVAR 61
Query: 344 WQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRD 460
WQRI F G+YA V G L V+ ++ RGI YRPR+
Sbjct: 62 WQRIDTFTPGIYATRVQGVLNEDVVESLRRRGINYRPRN 100
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 30.3 bits (65), Expect = 0.20
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 275 DCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAISVSG 397
D T+ N M+AV+N + +W R S FCKG+Y I G
Sbjct: 70 DATTQN-PFMLAVVNSNED-ARRWIRRSIFCKGIYEIYCIG 108
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 319 IHYCNHSIKVITCAIIDIIFVTFHA 245
++ + SI VI CA+ D+ + T HA
Sbjct: 609 VNILSSSISVIECAVNDVFYATVHA 633
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -1
Query: 400 PSRNRYCINSFTK---STNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVT 254
PS+ + + ++ + ++LPF NP +F + + S IT I ++F T
Sbjct: 399 PSKEVFPLEKYSSEPWNLHNLPFENPCLFNYSFSDLSSLTITRLSIGMVFYT 450
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 457 PWAIGNTSTLH-FSYYTCWQPSRNRYCINSFTKSTN 353
P ++G++ +L F + + N C+NSF+KS N
Sbjct: 178 PESVGSSKSLKIFKNFLSLADTPNIQCVNSFSKSAN 213
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 4.3
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = +2
Query: 122 IMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLR---MKSNKDNVYDCTSNN 292
IM ++ ELRG+ +C L F F+Y D FL ++ K ++
Sbjct: 683 IMWLKINDLELRGIVINSLCKLFTKFSNFDYLFEDRTVTFLTDFIIRKQKAHLSADQCKQ 742
Query: 293 FDGMIAVMNPEDSWVCKWQRISRFCK 370
++ +PE V + R+S K
Sbjct: 743 LANVLTQASPEAKTVLEQHRLSEMRK 768
>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
Rad31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 113 VCIENKLNNKHYIQNKLHYTNKFQFTIDFK 24
VCIE KLN K + + + +KF I F+
Sbjct: 235 VCIEQKLNEKTVLNGE--FLSKFSSNISFQ 262
>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 92 LAYFLYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQ 205
L FL+ R S+ + ET+ K+L L+ LIK F Q
Sbjct: 286 LQAFLFSRRSVGNRETLRKKLADPPEILIDGLIKRFTQ 323
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -2
Query: 240 NSSQLSQPSYSNWSNVFIKEQTRHARNPR 154
NSS S PS + WS + + H R
Sbjct: 251 NSSSTSNPSSAKWSRFTVYDDASHTHQLR 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,711
Number of Sequences: 5004
Number of extensions: 48972
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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