Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e06
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1317 - 25746608-25746703,25747001-25747135                       62   2e-10
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180...    29   1.9  
10_06_0032 + 9844812-9844881,9845759-9845958                           29   2.5  
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544           28   4.4  
03_04_0246 - 19324858-19325159,19325239-19325479,19326420-193265...    28   5.8  
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945...    27   7.7  

>07_03_1317 - 25746608-25746703,25747001-25747135
          Length = 76

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +2

Query: 161 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDG 301
           LRACL C L+KT+DQF  +GC+NC  FL M+ + DNV +CT+ NF G
Sbjct: 31  LRACLRCRLVKTYDQFMEQGCENC-PFLDMERDHDNVVNCTTPNFTG 76


>05_01_0243 -
           1806770-1806832,1806942-1807061,1807275-1807457,
           1807554-1807693,1807768-1808010,1808664-1808781,
           1808902-1808977,1809054-1809120,1809201-1809288,
           1809381-1809491,1809632-1809799,1809946-1810040,
           1810123-1810162,1810242-1810318,1810607-1810655,
           1810756-1810812,1810959-1811048,1811160-1811223,
           1812085-1812245
          Length = 669

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 302 MIAVMNPEDSWVCKWQRISRFCKGVYA-ISVSGRLPAGVIREMKS 433
           ++AV+NP +    KW   S  CKG +A I  S  L   +++E++S
Sbjct: 560 LVAVVNPHEENTMKWAE-SNGCKGSFAEICKSEGLKEHILKELQS 603


>10_06_0032 + 9844812-9844881,9845759-9845958
          Length = 89

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 344 ICKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHI 210
           +CK +C   ++ +  H + Y C  R   C F    I  + H LH+
Sbjct: 45  LCKWNCELVAMKRGGHLTSYECGDRECKCDFCASSIGADEHGLHV 89


>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
          Length = 1274

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 119 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEF 241
           +I+ +    +E +  R+ LVC+ +K+  +  YE  D  DEF
Sbjct: 44  AILDVIQDAEEKKNHRSGLVCAWLKSLKKVSYEAIDVFDEF 84


>03_04_0246 -
           19324858-19325159,19325239-19325479,19326420-19326594,
           19326681-19326748,19327248-19327365,19327979-19328007
          Length = 310

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 266 YLCY--FSCEEIHHNCHSLHIQIGQMSLSKSRPGMLAT 159
           YLCY   S E   + C+ LH    Q+S+S    GML T
Sbjct: 147 YLCYTSLSSEPDDYACNGLHRHSKQVSMSALILGMLTT 184


>02_05_0895 -
           32593155-32593190,32594228-32594279,32594544-32594584,
           32594795-32594906,32595195-32595268,32595349-32595587,
           32595710-32596678,32596725-32596878,32596957-32597244,
           32597393-32597534,32598679-32598752,32598870-32598890
          Length = 733

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 182 SLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN--FDGMIAVMNPE 325
           SLI ++    Y  C    ++L   S KD++Y C + N  +D       PE
Sbjct: 200 SLITSWFSGNYSECQLLQDYLNSISPKDHLYACCTGNVFYDAQNYFSTPE 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,621,353
Number of Sequences: 37544
Number of extensions: 273683
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)