BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e06 (559 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 36 0.022 SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 31 0.84 SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1 SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 1.5 SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 29 1.9 SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011) 29 1.9 SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065) 29 1.9 SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_29809| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4 SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 29 3.4 SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4 SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5 SB_28517| Best HMM Match : zf-CCHC (HMM E-Value=0.0045) 28 4.5 SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5 SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5) 28 4.5 SB_31297| Best HMM Match : DEAD (HMM E-Value=0.013) 28 5.9 SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9 SB_36975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9 SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 28 5.9 SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 28 5.9 SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 27 7.9 SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9 SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9 >SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) Length = 79 Score = 35.9 bits (79), Expect = 0.022 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 158 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280 G ACL+C+ T + CD C F R K++VY C Sbjct: 6 GNGACLICADRATGKHYGASSCDGCKGFFRRSVRKNHVYSC 46 >SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) Length = 311 Score = 30.7 bits (66), Expect = 0.84 Identities = 13/40 (32%), Positives = 16/40 (40%) Frame = +2 Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289 C VC I + + CD C F +D VY C N Sbjct: 35 CKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGN 74 >SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1200 Score = 30.3 bits (65), Expect = 1.1 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = -1 Query: 319 IHYCNHSIKVITCAIIDIIFVTFHA--KKFITIVTAFIFKLV 200 I+Y NH+ +I IIDII +T ITI+ + ++ Sbjct: 62 INYINHNSNIIITTIIDIIIITITIINNNIITIINIIVIAII 103 Score = 27.5 bits (58), Expect = 7.9 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 Query: 319 IHYCNHSIKVITCAIIDIIFVT 254 I+Y NH+ +I IID+I +T Sbjct: 33 INYINHNSNIIIITIIDVIIIT 54 >SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0) Length = 594 Score = 29.9 bits (64), Expect = 1.5 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Frame = -1 Query: 421 SYYTCWQPS-----RNRYCINSFTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIF 260 S+ CW P ++YCI S + S+P A AV +HY N + I A ++ F Sbjct: 242 SFVICWLPFFIVSLSHKYCI-SCRVAIESVPAATSAVKWLHYLNSCLNPIIYAFLNPTF 299 >SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) Length = 396 Score = 29.5 bits (63), Expect = 1.9 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Frame = +2 Query: 137 TVPKELRGLR-ACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292 T+PK R AC VC T + C+ C F + + Y C N Sbjct: 45 TMPKHKTDERVACAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNYTCRGQN 97 >SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011) Length = 318 Score = 29.5 bits (63), Expect = 1.9 Identities = 11/54 (20%), Positives = 26/54 (48%) Frame = +2 Query: 83 VYCLAYFLYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFL 244 ++ + Y Y++ + +S + + +C+ L T F++EG +N + L Sbjct: 110 MFLIVYLAYVQFAFISFGSTDQNYGSFASCMSTMLSMTLGGFDFEGLENNNRLL 163 >SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065) Length = 1275 Score = 29.5 bits (63), Expect = 1.9 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = +1 Query: 391 FWKVASRCNKRNEESRYCLS-PKGHK 465 F +V S+C K+N +R C+S P+ HK Sbjct: 1012 FGQVCSKCGKKNHFARVCMSTPQDHK 1037 >SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 482 Score = 29.1 bits (62), Expect = 2.6 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +2 Query: 104 LYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283 L + C S+ V G + ++C+ + DQ GCD D+ R++ +N CT Sbjct: 12 LNLSCDASSVIDVKSVYYGRASSVICAKGRNADQ----GCDLVDQKKRVRQKCNNSQTCT 67 Query: 284 SN 289 N Sbjct: 68 IN 69 >SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 435 Score = 29.1 bits (62), Expect = 2.6 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +2 Query: 104 LYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283 L + C S+ V G + ++C+ + DQ GCD D+ R++ +N CT Sbjct: 248 LNLSCDASSVIDVKSVYYGRASSVICAKGRNADQ----GCDLVDQKKRVRQKCNNSQTCT 303 Query: 284 SN 289 N Sbjct: 304 IN 305 >SB_29809| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 62 Score = 28.7 bits (61), Expect = 3.4 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -3 Query: 341 CKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEE 240 C C +L S + LCNHRH L CEE Sbjct: 9 CVDHCSVYALSSSDAEFQVLCNHRHKLLCDRCEE 42 >SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) Length = 405 Score = 28.7 bits (61), Expect = 3.4 Identities = 21/90 (23%), Positives = 36/90 (40%) Frame = +2 Query: 146 KELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPE 325 K ++ + C+VC T + CD C F + S + + C + N + E Sbjct: 16 KRIQDDQVCVVCGDQSTGKHYGVFACDGCSGFFKRTSRRLEPWVCKAQNACSVKTTSRNE 75 Query: 326 DSWVCKWQRISRFCKGVYAISVSGRLPAGV 415 CK R+ + C V + GR+P + Sbjct: 76 ----CKACRMKK-CVEV-GMKFDGRVPFAI 99 >SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1328 Score = 28.7 bits (61), Expect = 3.4 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -3 Query: 341 CKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEE 240 C C +L S + LCNHRH L CEE Sbjct: 351 CVDHCSVYALSSSDAEFQVLCNHRHKLLCDRCEE 384 >SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 204 Score = 28.3 bits (60), Expect = 4.5 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = -3 Query: 311 LQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHIQIGQMSLSKSRPGMLATRVILL 144 ++S SYYLC+ + + C +S + +H+ Q++ K LA +I++ Sbjct: 75 VRSCFVSYYLCSTKEFFCLYSSRSLCQGADIVHLP-NQIAAYKRCVLTLAIMIIII 129 >SB_28517| Best HMM Match : zf-CCHC (HMM E-Value=0.0045) Length = 134 Score = 28.3 bits (60), Expect = 4.5 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = +1 Query: 391 FWKVASRCNKRNEESRYCLSP-KGHK 465 F +V S+C+K+N +R C+S K HK Sbjct: 103 FGQVCSKCSKKNHFARVCMSTRKDHK 128 >SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 859 Score = 28.3 bits (60), Expect = 4.5 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 98 KLNNKHYIQNKLHYTNKFQFTIDFKLIRSKDR 3 K + K+Y NK H+T + F + + I SK+R Sbjct: 561 KKHKKNYKDNKEHHTRREHFKHNLRFIHSKNR 592 >SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5) Length = 260 Score = 28.3 bits (60), Expect = 4.5 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = -3 Query: 326 LQDSLLQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHIQIGQMSLSKS 180 + S LQ HQ + H H L Y C + H++ I I +++S S Sbjct: 161 VSSSSLQHHHQRHRHRQHHHQLQYIQCHQHHYSIIISVIDIINITISFS 209 >SB_31297| Best HMM Match : DEAD (HMM E-Value=0.013) Length = 198 Score = 27.9 bits (59), Expect = 5.9 Identities = 9/30 (30%), Positives = 18/30 (60%) Frame = +2 Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340 +S+K N+ + FD + + +N ED++ C Sbjct: 21 ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50 >SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1320 Score = 27.9 bits (59), Expect = 5.9 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = -1 Query: 253 FHAKKFITIV-TAFIFKLVKCLYQRADQACSQPA*FFWHRFYGHYTAPYV*KI 98 F AK + + T +F + QRA Q C Q +GHY P K+ Sbjct: 196 FLAKSLVYLAATVLVFYAGRSAIQRATQVCQQHKISLLSYLFGHYLQPRFTKV 248 >SB_36975| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 200 Score = 27.9 bits (59), Expect = 5.9 Identities = 9/30 (30%), Positives = 18/30 (60%) Frame = +2 Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340 +S+K N+ + FD + + +N ED++ C Sbjct: 21 ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50 >SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) Length = 556 Score = 27.9 bits (59), Expect = 5.9 Identities = 9/30 (30%), Positives = 18/30 (60%) Frame = +2 Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340 +S+K N+ + FD + + +N ED++ C Sbjct: 21 ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50 >SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) Length = 259 Score = 27.9 bits (59), Expect = 5.9 Identities = 11/44 (25%), Positives = 17/44 (38%) Frame = +2 Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDG 301 C VC + + CD C F + ++ Y C + N G Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKG 51 >SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) Length = 419 Score = 27.5 bits (58), Expect = 7.9 Identities = 11/41 (26%), Positives = 17/41 (41%) Frame = +2 Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292 C VC T + C+ C F + K+ +Y C +N Sbjct: 42 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSN 82 >SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 463 Score = 27.5 bits (58), Expect = 7.9 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = +2 Query: 257 NKDNVYDCTSNNFDGMIA-VMNPEDSWVCKWQRISRFCK--GVYAISVSGRLPAGVIREM 427 NK + D N+F + + + NPEDSW W+ S F K G + ++ S A + Sbjct: 143 NKVDFKDKFMNDFKKLPSEIRNPEDSW--SWKDYSHFIKTYGSHMVT-SVTYGASIYSYA 199 Query: 428 KSRGIAYRPRDTSQR*KCL 484 SR ++R D + CL Sbjct: 200 FSRSGSHRTEDDFRIKACL 218 >SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 874 Score = 27.5 bits (58), Expect = 7.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +2 Query: 293 FDGMIAVMNPEDSWVCKWQRISRF 364 FD I +P D WVC ++I F Sbjct: 640 FDAAIEQAHPSDMWVCSTKKIGAF 663 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,676,100 Number of Sequences: 59808 Number of extensions: 357551 Number of successful extensions: 1174 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1172 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1300738331 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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