Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e06
(559 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 36 0.022
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 31 0.84
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 1.5
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 29 1.9
SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011) 29 1.9
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065) 29 1.9
SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_29809| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 29 3.4
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_28517| Best HMM Match : zf-CCHC (HMM E-Value=0.0045) 28 4.5
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5) 28 4.5
SB_31297| Best HMM Match : DEAD (HMM E-Value=0.013) 28 5.9
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_36975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 28 5.9
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 28 5.9
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 27 7.9
SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 158 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
G ACL+C+ T + CD C F R K++VY C
Sbjct: 6 GNGACLICADRATGKHYGASSCDGCKGFFRRSVRKNHVYSC 46
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 30.7 bits (66), Expect = 0.84
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +2
Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
C VC I + + CD C F +D VY C N
Sbjct: 35 CKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGN 74
>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 319 IHYCNHSIKVITCAIIDIIFVTFHA--KKFITIVTAFIFKLV 200
I+Y NH+ +I IIDII +T ITI+ + ++
Sbjct: 62 INYINHNSNIIITTIIDIIIITITIINNNIITIINIIVIAII 103
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 319 IHYCNHSIKVITCAIIDIIFVT 254
I+Y NH+ +I IID+I +T
Sbjct: 33 INYINHNSNIIIITIIDVIIIT 54
>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 594
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = -1
Query: 421 SYYTCWQPS-----RNRYCINSFTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIF 260
S+ CW P ++YCI S + S+P A AV +HY N + I A ++ F
Sbjct: 242 SFVICWLPFFIVSLSHKYCI-SCRVAIESVPAATSAVKWLHYLNSCLNPIIYAFLNPTF 299
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +2
Query: 137 TVPKELRGLR-ACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
T+PK R AC VC T + C+ C F + + Y C N
Sbjct: 45 TMPKHKTDERVACAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNYTCRGQN 97
>SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)
Length = 318
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/54 (20%), Positives = 26/54 (48%)
Frame = +2
Query: 83 VYCLAYFLYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFL 244
++ + Y Y++ + +S + + +C+ L T F++EG +N + L
Sbjct: 110 MFLIVYLAYVQFAFISFGSTDQNYGSFASCMSTMLSMTLGGFDFEGLENNNRLL 163
>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
Length = 1275
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 391 FWKVASRCNKRNEESRYCLS-PKGHK 465
F +V S+C K+N +R C+S P+ HK
Sbjct: 1012 FGQVCSKCGKKNHFARVCMSTPQDHK 1037
>SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 104 LYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283
L + C S+ V G + ++C+ + DQ GCD D+ R++ +N CT
Sbjct: 12 LNLSCDASSVIDVKSVYYGRASSVICAKGRNADQ----GCDLVDQKKRVRQKCNNSQTCT 67
Query: 284 SN 289
N
Sbjct: 68 IN 69
>SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 104 LYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283
L + C S+ V G + ++C+ + DQ GCD D+ R++ +N CT
Sbjct: 248 LNLSCDASSVIDVKSVYYGRASSVICAKGRNADQ----GCDLVDQKKRVRQKCNNSQTCT 303
Query: 284 SN 289
N
Sbjct: 304 IN 305
>SB_29809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 341 CKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEE 240
C C +L S + LCNHRH L CEE
Sbjct: 9 CVDHCSVYALSSSDAEFQVLCNHRHKLLCDRCEE 42
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/90 (23%), Positives = 36/90 (40%)
Frame = +2
Query: 146 KELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPE 325
K ++ + C+VC T + CD C F + S + + C + N + E
Sbjct: 16 KRIQDDQVCVVCGDQSTGKHYGVFACDGCSGFFKRTSRRLEPWVCKAQNACSVKTTSRNE 75
Query: 326 DSWVCKWQRISRFCKGVYAISVSGRLPAGV 415
CK R+ + C V + GR+P +
Sbjct: 76 ----CKACRMKK-CVEV-GMKFDGRVPFAI 99
>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1328
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 341 CKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEE 240
C C +L S + LCNHRH L CEE
Sbjct: 351 CVDHCSVYALSSSDAEFQVLCNHRHKLLCDRCEE 384
>SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 311 LQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHIQIGQMSLSKSRPGMLATRVILL 144
++S SYYLC+ + + C +S + +H+ Q++ K LA +I++
Sbjct: 75 VRSCFVSYYLCSTKEFFCLYSSRSLCQGADIVHLP-NQIAAYKRCVLTLAIMIIII 129
>SB_28517| Best HMM Match : zf-CCHC (HMM E-Value=0.0045)
Length = 134
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 391 FWKVASRCNKRNEESRYCLSP-KGHK 465
F +V S+C+K+N +R C+S K HK
Sbjct: 103 FGQVCSKCSKKNHFARVCMSTRKDHK 128
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 98 KLNNKHYIQNKLHYTNKFQFTIDFKLIRSKDR 3
K + K+Y NK H+T + F + + I SK+R
Sbjct: 561 KKHKKNYKDNKEHHTRREHFKHNLRFIHSKNR 592
>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
Length = 260
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 326 LQDSLLQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHIQIGQMSLSKS 180
+ S LQ HQ + H H L Y C + H++ I I +++S S
Sbjct: 161 VSSSSLQHHHQRHRHRQHHHQLQYIQCHQHHYSIIISVIDIINITISFS 209
>SB_31297| Best HMM Match : DEAD (HMM E-Value=0.013)
Length = 198
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340
+S+K N+ + FD + + +N ED++ C
Sbjct: 21 ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50
>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1320
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -1
Query: 253 FHAKKFITIV-TAFIFKLVKCLYQRADQACSQPA*FFWHRFYGHYTAPYV*KI 98
F AK + + T +F + QRA Q C Q +GHY P K+
Sbjct: 196 FLAKSLVYLAATVLVFYAGRSAIQRATQVCQQHKISLLSYLFGHYLQPRFTKV 248
>SB_36975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340
+S+K N+ + FD + + +N ED++ C
Sbjct: 21 ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340
+S+K N+ + FD + + +N ED++ C
Sbjct: 21 ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/44 (25%), Positives = 17/44 (38%)
Frame = +2
Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDG 301
C VC + + CD C F + ++ Y C + N G
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKG 51
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +2
Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
C VC T + C+ C F + K+ +Y C +N
Sbjct: 42 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSN 82
>SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 257 NKDNVYDCTSNNFDGMIA-VMNPEDSWVCKWQRISRFCK--GVYAISVSGRLPAGVIREM 427
NK + D N+F + + + NPEDSW W+ S F K G + ++ S A +
Sbjct: 143 NKVDFKDKFMNDFKKLPSEIRNPEDSW--SWKDYSHFIKTYGSHMVT-SVTYGASIYSYA 199
Query: 428 KSRGIAYRPRDTSQR*KCL 484
SR ++R D + CL
Sbjct: 200 FSRSGSHRTEDDFRIKACL 218
>SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 293 FDGMIAVMNPEDSWVCKWQRISRF 364
FD I +P D WVC ++I F
Sbjct: 640 FDAAIEQAHPSDMWVCSTKKIGAF 663
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,100
Number of Sequences: 59808
Number of extensions: 357551
Number of successful extensions: 1174
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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