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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e06
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)                  36   0.022
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)             31   0.84 
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.1  
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   1.5  
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)                       29   1.9  
SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)            29   1.9  
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)               29   1.9  
SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_29809| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)         29   3.4  
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_28517| Best HMM Match : zf-CCHC (HMM E-Value=0.0045)                28   4.5  
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      28   4.5  
SB_31297| Best HMM Match : DEAD (HMM E-Value=0.013)                    28   5.9  
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_36975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)              28   5.9  
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)                  28   5.9  
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)             27   7.9  
SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
          Length = 79

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 158 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           G  ACL+C+   T   +    CD C  F R    K++VY C
Sbjct: 6   GNGACLICADRATGKHYGASSCDGCKGFFRRSVRKNHVYSC 46


>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
          Length = 311

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           C VC  I +   +    CD C  F      +D VY C  N
Sbjct: 35  CKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGN 74


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 319 IHYCNHSIKVITCAIIDIIFVTFHA--KKFITIVTAFIFKLV 200
           I+Y NH+  +I   IIDII +T        ITI+   +  ++
Sbjct: 62  INYINHNSNIIITTIIDIIIITITIINNNIITIINIIVIAII 103



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 319 IHYCNHSIKVITCAIIDIIFVT 254
           I+Y NH+  +I   IID+I +T
Sbjct: 33  INYINHNSNIIIITIIDVIIIT 54


>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -1

Query: 421 SYYTCWQPS-----RNRYCINSFTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIF 260
           S+  CW P       ++YCI S   +  S+P A  AV  +HY N  +  I  A ++  F
Sbjct: 242 SFVICWLPFFIVSLSHKYCI-SCRVAIESVPAATSAVKWLHYLNSCLNPIIYAFLNPTF 299


>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
          Length = 396

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 137 TVPKELRGLR-ACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           T+PK     R AC VC    T   +    C+ C  F +     +  Y C   N
Sbjct: 45  TMPKHKTDERVACAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNYTCRGQN 97


>SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)
          Length = 318

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/54 (20%), Positives = 26/54 (48%)
 Frame = +2

Query: 83  VYCLAYFLYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFL 244
           ++ + Y  Y++ + +S  +  +      +C+   L  T   F++EG +N +  L
Sbjct: 110 MFLIVYLAYVQFAFISFGSTDQNYGSFASCMSTMLSMTLGGFDFEGLENNNRLL 163


>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
          Length = 1275

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 391  FWKVASRCNKRNEESRYCLS-PKGHK 465
            F +V S+C K+N  +R C+S P+ HK
Sbjct: 1012 FGQVCSKCGKKNHFARVCMSTPQDHK 1037


>SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 104 LYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283
           L + C   S+  V     G  + ++C+  +  DQ    GCD  D+  R++   +N   CT
Sbjct: 12  LNLSCDASSVIDVKSVYYGRASSVICAKGRNADQ----GCDLVDQKKRVRQKCNNSQTCT 67

Query: 284 SN 289
            N
Sbjct: 68  IN 69


>SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 104 LYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283
           L + C   S+  V     G  + ++C+  +  DQ    GCD  D+  R++   +N   CT
Sbjct: 248 LNLSCDASSVIDVKSVYYGRASSVICAKGRNADQ----GCDLVDQKKRVRQKCNNSQTCT 303

Query: 284 SN 289
            N
Sbjct: 304 IN 305


>SB_29809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 341 CKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEE 240
           C   C   +L  S  +   LCNHRH L    CEE
Sbjct: 9   CVDHCSVYALSSSDAEFQVLCNHRHKLLCDRCEE 42


>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
          Length = 405

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/90 (23%), Positives = 36/90 (40%)
 Frame = +2

Query: 146 KELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPE 325
           K ++  + C+VC    T   +    CD C  F +  S +   + C + N   +      E
Sbjct: 16  KRIQDDQVCVVCGDQSTGKHYGVFACDGCSGFFKRTSRRLEPWVCKAQNACSVKTTSRNE 75

Query: 326 DSWVCKWQRISRFCKGVYAISVSGRLPAGV 415
               CK  R+ + C  V  +   GR+P  +
Sbjct: 76  ----CKACRMKK-CVEV-GMKFDGRVPFAI 99


>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 341 CKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEE 240
           C   C   +L  S  +   LCNHRH L    CEE
Sbjct: 351 CVDHCSVYALSSSDAEFQVLCNHRHKLLCDRCEE 384


>SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -3

Query: 311 LQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHIQIGQMSLSKSRPGMLATRVILL 144
           ++S   SYYLC+ + + C +S   +      +H+   Q++  K     LA  +I++
Sbjct: 75  VRSCFVSYYLCSTKEFFCLYSSRSLCQGADIVHLP-NQIAAYKRCVLTLAIMIIII 129


>SB_28517| Best HMM Match : zf-CCHC (HMM E-Value=0.0045)
          Length = 134

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 391 FWKVASRCNKRNEESRYCLSP-KGHK 465
           F +V S+C+K+N  +R C+S  K HK
Sbjct: 103 FGQVCSKCSKKNHFARVCMSTRKDHK 128


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 98  KLNNKHYIQNKLHYTNKFQFTIDFKLIRSKDR 3
           K + K+Y  NK H+T +  F  + + I SK+R
Sbjct: 561 KKHKKNYKDNKEHHTRREHFKHNLRFIHSKNR 592


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 326 LQDSLLQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHIQIGQMSLSKS 180
           +  S LQ  HQ +    H H L Y  C + H++     I I  +++S S
Sbjct: 161 VSSSSLQHHHQRHRHRQHHHQLQYIQCHQHHYSIIISVIDIINITISFS 209


>SB_31297| Best HMM Match : DEAD (HMM E-Value=0.013)
          Length = 198

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340
           +S+K N+     + FD + + +N ED++ C
Sbjct: 21  ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50


>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1320

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 253 FHAKKFITIV-TAFIFKLVKCLYQRADQACSQPA*FFWHRFYGHYTAPYV*KI 98
           F AK  + +  T  +F   +   QRA Q C Q         +GHY  P   K+
Sbjct: 196 FLAKSLVYLAATVLVFYAGRSAIQRATQVCQQHKISLLSYLFGHYLQPRFTKV 248


>SB_36975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340
           +S+K N+     + FD + + +N ED++ C
Sbjct: 21  ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50


>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
          Length = 556

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 251 KSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340
           +S+K N+     + FD + + +N ED++ C
Sbjct: 21  ESSKQNIKSLKDSQFDALYSFLNSEDTFAC 50


>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
          Length = 259

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDG 301
           C VC    +   +    CD C  F +    ++  Y C + N  G
Sbjct: 8   CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKG 51


>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
          Length = 419

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           C VC    T   +    C+ C  F +    K+ +Y C  +N
Sbjct: 42  CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSN 82


>SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +2

Query: 257 NKDNVYDCTSNNFDGMIA-VMNPEDSWVCKWQRISRFCK--GVYAISVSGRLPAGVIREM 427
           NK +  D   N+F  + + + NPEDSW   W+  S F K  G + ++ S    A +    
Sbjct: 143 NKVDFKDKFMNDFKKLPSEIRNPEDSW--SWKDYSHFIKTYGSHMVT-SVTYGASIYSYA 199

Query: 428 KSRGIAYRPRDTSQR*KCL 484
            SR  ++R  D  +   CL
Sbjct: 200 FSRSGSHRTEDDFRIKACL 218


>SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 293 FDGMIAVMNPEDSWVCKWQRISRF 364
           FD  I   +P D WVC  ++I  F
Sbjct: 640 FDAAIEQAHPSDMWVCSTKKIGAF 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,100
Number of Sequences: 59808
Number of extensions: 357551
Number of successful extensions: 1174
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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