SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e06
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099916-1|AAC68775.1|  120|Caenorhabditis elegans Spt transcrip...   148   3e-36
U97003-7|AAB52274.1|  357|Caenorhabditis elegans Hypothetical pr...    34   0.060
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    33   0.14 
U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone...    31   0.43 
AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear recep...    31   0.43 
U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.        30   0.98 
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    30   0.98 
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    30   0.98 
AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormo...    30   0.98 
Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z46787-22|CAO78708.1|  666|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z46787-21|CAO78707.1|  714|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z46787-20|CAC42257.1|  791|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z46787-19|CAO78706.1|  801|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z46787-18|CAO78705.1|  805|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z46787-17|CAO78704.1|  863|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z46787-16|CAO78703.1|  821|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z46787-15|CAO78702.1|  829|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z35596-8|CAO78718.1|  666|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z35596-7|CAO78717.1|  714|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z35596-6|CAA84644.2|  791|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z35596-5|CAO78716.1|  801|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z35596-4|CAO78715.1|  805|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z35596-3|CAO78714.1|  863|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z35596-2|CAO78713.1|  821|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z35596-1|CAO78712.1|  829|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF257518-1|AAF68999.1|  791|Caenorhabditis elegans HERG-like pot...    29   1.7  
Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p...    29   2.3  
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear recep...    29   2.3  
AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear recep...    29   2.3  
Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    29   3.0  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   3.0  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   3.0  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   3.0  
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z82259-8|CAC70072.3|  410|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical p...    28   4.0  
AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormo...    28   5.2  
Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z50004-1|CAA90291.1|  396|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U41104-4|AAK67239.1|  388|Caenorhabditis elegans Nuclear hormone...    27   6.9  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   6.9  
AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear recep...    27   6.9  
AF083231-1|AAD03689.1|  388|Caenorhabditis elegans nuclear recep...    27   6.9  
AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear horm...    27   6.9  
Z81496-8|CAB04068.1|  498|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AY305844-1|AAR11988.1|  423|Caenorhabditis elegans nuclear recep...    27   9.1  
AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear recep...    27   9.1  
AL032626-18|CAA21543.2|  458|Caenorhabditis elegans Hypothetical...    27   9.1  
AF273828-1|AAG15177.1|  422|Caenorhabditis elegans nuclear recep...    27   9.1  
AF273827-1|AAG15176.1|  421|Caenorhabditis elegans nuclear recep...    27   9.1  
AF273826-1|AAG15175.1|  419|Caenorhabditis elegans nuclear recep...    27   9.1  
AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear recep...    27   9.1  
AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear recep...    27   9.1  
AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormo...    27   9.1  
AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormo...    27   9.1  
AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormo...    27   9.1  
AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormo...    27   9.1  
AC024771-7|AAK70663.4|  407|Caenorhabditis elegans Nuclear hormo...    27   9.1  

>AF099916-1|AAC68775.1|  120|Caenorhabditis elegans Spt
           transcription factor familyprotein 4 protein.
          Length = 120

 Score =  148 bits (358), Expect = 3e-36
 Identities = 63/116 (54%), Positives = 89/116 (76%), Gaps = 2/116 (1%)
 Frame = +2

Query: 137 TVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVM 316
           +VP +LR LRACL+CSL+K+ + F+ EGC+NC++ L +K +++ VYDCTS N+DGMIA M
Sbjct: 4   SVPADLRNLRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAM 63

Query: 317 NPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRP--RDTSQR*K 478
           +  +SWVCKWQ++ R  KG+YAISVSG LP  ++ E+KS G+ Y+P  RD S + K
Sbjct: 64  SNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQRDYSTQFK 119


>U97003-7|AAB52274.1|  357|Caenorhabditis elegans Hypothetical
           protein F47C10.4 protein.
          Length = 357

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 28/106 (26%), Positives = 40/106 (37%)
 Frame = +2

Query: 119 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 298
           S  S E     L G +AC+VC        F    CD C  F R     +  Y C   N  
Sbjct: 10  SSSSPEMFALNLTGQKACVVCKRPANCYNFGVMSCDACKMFFRRTMLLNVQYVCRRKN-- 67

Query: 299 GMIAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSR 436
                   +DS+ C      R C+ V  + V  +L    + E+K++
Sbjct: 68  -----QCFDDSFSCLKTPYCRACRLVQCVKVGMKLNLSAMLEVKNQ 108


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 382 CINSFTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVTF 251
           C N   KS +S P A   V++ H+C  S  ++   ++ +  +TF
Sbjct: 443 CTNGLDKSNSSFPNATSYVWQKHHCTTSYTILPIVMMGVYLLTF 486


>U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 10 protein.
          Length = 395

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           CLVCS I T   +    C+ C  F R    K+  + C
Sbjct: 18  CLVCSDISTGYHYGVPSCNGCKTFFRRTIMKNQTFSC 54


>AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-10 protein.
          Length = 395

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           CLVCS I T   +    C+ C  F R    K+  + C
Sbjct: 18  CLVCSDISTGYHYGVPSCNGCKTFFRRTIMKNQTFSC 54


>U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.
          Length = 359

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283
           C+VC    T   +  + C+ C  F R   +K+  Y CT
Sbjct: 105 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 142


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283
           C+VC    T   +  + C+ C  F R   +K+  Y CT
Sbjct: 220 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 257


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283
           C+VC    T   +  + C+ C  F R   +K+  Y CT
Sbjct: 216 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 253


>AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 2 protein.
          Length = 359

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 283
           C+VC    T   +  + C+ C  F R   +K+  Y CT
Sbjct: 105 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 142


>Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC455.3 protein.
          Length = 526

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 370 FTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVTFHAKKFITIVTAFIFKL 203
           F +  N  P+AN   F   YC  S+ ++ C I  +  V F    F  +V + I KL
Sbjct: 468 FAQVDNLEPYANKYNFIEFYCLDSLALVVCTISVVALVMFKILSF--VVNSVIEKL 521


>Z46787-22|CAO78708.1|  666|Caenorhabditis elegans Hypothetical
           protein C30D11.1h protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329


>Z46787-21|CAO78707.1|  714|Caenorhabditis elegans Hypothetical
           protein C30D11.1g protein.
          Length = 714

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329


>Z46787-20|CAC42257.1|  791|Caenorhabditis elegans Hypothetical
           protein C30D11.1f protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329


>Z46787-19|CAO78706.1|  801|Caenorhabditis elegans Hypothetical
           protein C30D11.1e protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 250 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 307

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 308 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 339


>Z46787-18|CAO78705.1|  805|Caenorhabditis elegans Hypothetical
           protein C30D11.1d protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 254 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 311

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 312 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 343


>Z46787-17|CAO78704.1|  863|Caenorhabditis elegans Hypothetical
           protein C30D11.1c protein.
          Length = 863

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 312 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 369

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 370 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 401


>Z46787-16|CAO78703.1|  821|Caenorhabditis elegans Hypothetical
           protein C30D11.1b protein.
          Length = 821

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 270 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 327

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 328 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 359


>Z46787-15|CAO78702.1|  829|Caenorhabditis elegans Hypothetical
           protein C30D11.1a protein.
          Length = 829

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 278 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 335

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 336 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 367


>Z35596-8|CAO78718.1|  666|Caenorhabditis elegans Hypothetical
           protein C30D11.1h protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329


>Z35596-7|CAO78717.1|  714|Caenorhabditis elegans Hypothetical
           protein C30D11.1g protein.
          Length = 714

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329


>Z35596-6|CAA84644.2|  791|Caenorhabditis elegans Hypothetical
           protein C30D11.1f protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329


>Z35596-5|CAO78716.1|  801|Caenorhabditis elegans Hypothetical
           protein C30D11.1e protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 250 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 307

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 308 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 339


>Z35596-4|CAO78715.1|  805|Caenorhabditis elegans Hypothetical
           protein C30D11.1d protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 254 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 311

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 312 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 343


>Z35596-3|CAO78714.1|  863|Caenorhabditis elegans Hypothetical
           protein C30D11.1c protein.
          Length = 863

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 312 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 369

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 370 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 401


>Z35596-2|CAO78713.1|  821|Caenorhabditis elegans Hypothetical
           protein C30D11.1b protein.
          Length = 821

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 270 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 327

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 328 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 359


>Z35596-1|CAO78712.1|  829|Caenorhabditis elegans Hypothetical
           protein C30D11.1a protein.
          Length = 829

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 278 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 335

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 336 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 367


>AF257518-1|AAF68999.1|  791|Caenorhabditis elegans HERG-like
           potassium channel protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 469 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 296
           LAC+ +AIG+    H  Y   W    ++     +T +  ++P   P +   +  +   ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297

Query: 295 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
             IT      +  T  ++K  TI+   +  L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329


>Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical
           protein K06B4.11 protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           CL+C  +     F    C  C  F R     + V+DC  N
Sbjct: 23  CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 62


>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
            protein M01G12.12 protein.
          Length = 1579

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/76 (23%), Positives = 30/76 (39%)
 Frame = +2

Query: 209  EYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAIS 388
            E++G DN  +    KS +  +    S   DG    M      +  +    +     Y I 
Sbjct: 1075 EFQGIDNAMKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQ 1134

Query: 389  VSGRLPAGVIREMKSR 436
              G + +G I EM++R
Sbjct: 1135 SEGEIMSGCIIEMRNR 1150


>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
            protein M01G12.12 protein.
          Length = 1579

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/76 (23%), Positives = 30/76 (39%)
 Frame = +2

Query: 209  EYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAIS 388
            E++G DN  +    KS +  +    S   DG    M      +  +    +     Y I 
Sbjct: 1075 EFQGIDNAMKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQ 1134

Query: 389  VSGRLPAGVIREMKSR 436
              G + +G I EM++R
Sbjct: 1135 SEGEIMSGCIIEMRNR 1150


>AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           CL+C  +     F    C  C  F R     + V+DC  N
Sbjct: 24  CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 63


>AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           CL+C  +     F    C  C  F R     + V+DC  N
Sbjct: 25  CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 64


>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 361 STNSLPFANPAVFRIHYCN--HSIKVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 200
           +++ +PF     F ++ C    SI ++ CA  ++IF       F+ I+ +F+F L+
Sbjct: 19  NSSFMPFWRRTAF-VYKCELAFSILILFCAFAELIFYDCFVIFFLMIIASFVFVLL 73


>Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical
           protein C43C3.2 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -1

Query: 301 SIKVITCAIIDIIFVTFHAKKFITIVTAFIFKLVKCLYQRADQACSQPA*FFWHRFYGHY 122
           +I V   AI  +   +FH   +     + ++ L + LYQ      S P   F +  YG +
Sbjct: 313 TIPVGHIAIYTLAICSFHFICWTPYWISILYSLYEELYQDTKSTASPPTYAFIYFMYGVH 372

Query: 121 TAPYV 107
             PY+
Sbjct: 373 ALPYI 377


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/58 (27%), Positives = 20/58 (34%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 343
           C +C  +     F    C  C  F R     D  YDC +   D     +N E    CK
Sbjct: 3   CAICDSVALSLHFGAPSCKACAAFFRRTVALDITYDCITGTLD---CEVNFERRMACK 57


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 298
           CL+CS   T   FE + C  C  F R        + C +   D
Sbjct: 12  CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 54


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 298
           CL+CS   T   FE + C  C  F R        + C +   D
Sbjct: 30  CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 72


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 298
           CL+CS   T   FE + C  C  F R        + C +   D
Sbjct: 12  CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 54


>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
           protein C09H5.2b protein.
          Length = 1039

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = +2

Query: 116 CSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCD----NCDEFLRMKSN----KDNV 271
           CS ++I+ VP EL G R   +    + ++ F  EGC      C +F    ++    K N 
Sbjct: 559 CSTINIDGVPMELNGKR---MDDFNEAYETFGDEGCRVIGFACKKFRAPATSTFSIKSNT 615

Query: 272 YDCTSNNFDGMIAVMNP 322
               + +F GM A+M+P
Sbjct: 616 IPMDNWDFLGMSAIMDP 632


>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
           protein C09H5.2a protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = +2

Query: 116 CSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCD----NCDEFLRMKSN----KDNV 271
           CS ++I+ VP EL G R   +    + ++ F  EGC      C +F    ++    K N 
Sbjct: 559 CSTINIDGVPMELNGKR---MDDFNEAYETFGDEGCRVIGFACKKFRAPATSTFSIKSNT 615

Query: 272 YDCTSNNFDGMIAVMNP 322
               + +F GM A+M+P
Sbjct: 616 IPMDNWDFLGMSAIMDP 632


>Z82259-8|CAC70072.3|  410|Caenorhabditis elegans Hypothetical
           protein C28D4.9 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 164 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           R CLVC   K    +    C+ C  F R    +   Y C +N
Sbjct: 13  RRCLVCGDDKASRHYGTVACNGCKGFFRRSVWEKRTYFCIAN 54


>Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical
           protein R08H2.13 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 451 AIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFAN 335
           ++ N   +  + Y C++P    YCI SF K   S+   N
Sbjct: 286 SLANVVPIAVAIYPCFEPLAAMYCIKSFQKRIFSILTCN 324


>AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 204 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 167 ACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           AC VC    T   ++   C+ C  F R  + +   Y C++ N
Sbjct: 50  ACQVCYGKATGHHYDVASCNGCKSFFRRVTIEKLKYRCSAGN 91


>Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical
           protein F57A10.5 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           CL+C        ++   C+ C  F R     D  ++C
Sbjct: 47  CLICGNSANGHHYDVASCNGCKTFFRRMCVSDRSFEC 83


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 164 RACLVCSLIKTFD-QFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           + C VC   K F   F    C++C  F R  +NK+    C  N
Sbjct: 98  KVCRVCG-DKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFN 139


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 164 RACLVCSLIKTFD-QFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           + C VC   K F   F    C++C  F R  +NK+    C  N
Sbjct: 98  KVCRVCG-DKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFN 139


>Z50004-1|CAA90291.1|  396|Caenorhabditis elegans Hypothetical
           protein C02B4.2 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           C VC  + +   +    C+ C  F R    ++  Y C +N
Sbjct: 31  CSVCGDVASGIHYSVAACNGCKTFFRRVVLENRTYSCKNN 70


>U41104-4|AAK67239.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 16 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           C +C        F  E C  C  F R   +    Y C  NN
Sbjct: 14  CAICQESAEGFHFGAEACRACAAFFRRTVSNRKTYSCQGNN 54


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 164 RACLVCSLIKTFD-QFEYEGCDNCDEFLRMKSNKDNVYDCTSN 289
           + C VC   K F   F    C++C  F R  +NK+    C  N
Sbjct: 98  KVCRVCG-DKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFN 139


>AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear receptor
           NHR-60 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           CL+C        ++   C+ C  F R     D  ++C
Sbjct: 46  CLICGNSANGHHYDVASCNGCKTFFRRMCVSDRSFEC 82


>AF083231-1|AAD03689.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-16 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           C +C        F  E C  C  F R   +    Y C  NN
Sbjct: 14  CAICQESAEGFHFGAEACRACAAFFRRTVSNRKTYSCQGNN 54


>AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 99 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/58 (25%), Positives = 22/58 (37%)
 Frame = +2

Query: 119 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           S+ S+++     R +R C +C        F    C  C  F R      N+  C  NN
Sbjct: 9   SLSSLDSPLVPTRSMRTCEICDKPSHGKHFGAVTCRACAMFFRRFGRCKNMKPCEMNN 66


>Z81496-8|CAB04068.1|  498|Caenorhabditis elegans Hypothetical
           protein F09C6.8 protein.
          Length = 498

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/89 (22%), Positives = 34/89 (38%)
 Frame = +2

Query: 134 ETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAV 313
           E  P   R    C VC      D++    C  C  F R    K+  Y C     + +I+ 
Sbjct: 24  EPSPSSKRPTENCKVCGDRPNNDRYGASACLGCTVFFRRAVVKNLKYKCMKEQ-NCLISC 82

Query: 314 MNPEDSWVCKWQRISRFCKGVYAISVSGR 400
                   C++Q+   F  G+++ ++  R
Sbjct: 83  TYRNACRYCRFQKC--FAVGMHSSAIQRR 109


>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 555 LTLLVSEQFILIKY*YIFLFYINTKHFYLWLV 460
           +TLL  E F ++   ++F FY N K+F+ +++
Sbjct: 379 ITLLDQENFFVL---HLFCFYHNIKYFFYYII 407


>AY305844-1|AAR11988.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-86 protein.
          Length = 423

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           C +C        F  E C  C  F R   + D  Y C  NN
Sbjct: 40  CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 80


>AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +2

Query: 155 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           R + AC +C    T   F  + C  C  F R     +  Y C
Sbjct: 151 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 192


>AL032626-18|CAA21543.2|  458|Caenorhabditis elegans Hypothetical
           protein Y37D8A.22 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 115 VQYNVHRNGAKRITRVASMPGLLFD 189
           V++N+HR G   I   AS+P  LFD
Sbjct: 263 VEHNIHRLGFPGILLFASIPNPLFD 287


>AF273828-1|AAG15177.1|  422|Caenorhabditis elegans nuclear receptor
           NHR-86 protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           C +C        F  E C  C  F R   + D  Y C  NN
Sbjct: 39  CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 79


>AF273827-1|AAG15176.1|  421|Caenorhabditis elegans nuclear receptor
           NHR-86 protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           C +C        F  E C  C  F R   + D  Y C  NN
Sbjct: 38  CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 78


>AF273826-1|AAG15175.1|  419|Caenorhabditis elegans nuclear receptor
           NHR-86 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           C +C        F  E C  C  F R   + D  Y C  NN
Sbjct: 36  CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 76


>AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +2

Query: 155 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           R + AC +C    T   F  + C  C  F R     +  Y C
Sbjct: 155 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 196


>AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 619

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +2

Query: 155 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           R + AC +C    T   F  + C  C  F R     +  Y C
Sbjct: 150 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 191


>AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform b protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +2

Query: 155 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           R + AC +C    T   F  + C  C  F R     +  Y C
Sbjct: 57  RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 98


>AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform a protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +2

Query: 155 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           R + AC +C    T   F  + C  C  F R     +  Y C
Sbjct: 108 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 149


>AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform d protein.
          Length = 659

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +2

Query: 155 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           R + AC +C    T   F  + C  C  F R     +  Y C
Sbjct: 190 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 231


>AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform c protein.
          Length = 733

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +2

Query: 155 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           R + AC +C    T   F  + C  C  F R     +  Y C
Sbjct: 264 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 305


>AC024771-7|AAK70663.4|  407|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 86 protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 292
           C +C        F  E C  C  F R   + D  Y C  NN
Sbjct: 24  CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,888
Number of Sequences: 27780
Number of extensions: 281329
Number of successful extensions: 1020
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -