Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e06
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   6.4  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/37 (24%), Positives = 14/37 (37%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           C +C    +   +    C+ C  F +    KD  Y C
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 146


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/37 (24%), Positives = 14/37 (37%)
 Frame = +2

Query: 170 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 280
           C +C    +   +    C+ C  F +    KD  Y C
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 146


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
          receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 39 KLKFICVMQFILNV 80
          KLK I ++QFIL+V
Sbjct: 48 KLKIIEILQFILDV 61


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
          1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 39 KLKFICVMQFILNV 80
          KLK I ++QFIL+V
Sbjct: 16 KLKIIEILQFILDV 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,265
Number of Sequences: 438
Number of extensions: 3275
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)