BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e06 (559 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g63670.1 68418.m07993 transcription initiation protein-relate... 92 2e-19 At5g08565.1 68418.m01019 expressed protein 92 3e-19 At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel... 29 2.8 At2g16770.1 68415.m01923 expressed protein 28 3.7 At5g59920.1 68418.m07514 DC1 domain-containing protein contains ... 28 4.9 At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 27 8.5 At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3... 27 8.5 >At5g63670.1 68418.m07993 transcription initiation protein-related contains weak similarity to Transcription initiation protein SPT4 homolog 1 (Swiss-Prot:Q16550) [Mus musculus] Length = 116 Score = 92.3 bits (219), Expect = 2e-19 Identities = 38/82 (46%), Positives = 56/82 (68%) Frame = +2 Query: 161 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340 LRACL C L+KT+DQF GC+NC F +M+ + + + + T+ NF+G+I+VM+P SW Sbjct: 16 LRACLRCRLVKTYDQFRDAGCENCP-FFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAA 74 Query: 341 KWQRISRFCKGVYAISVSGRLP 406 +W RI +F G Y ++VS LP Sbjct: 75 RWLRIGKFAPGCYTLAVSEPLP 96 >At5g08565.1 68418.m01019 expressed protein Length = 116 Score = 91.9 bits (218), Expect = 3e-19 Identities = 37/82 (45%), Positives = 56/82 (68%) Frame = +2 Query: 161 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340 LRACL C L+KT+DQF GC+NC F +++ + + + D T+ NF+G+I++M+P SW Sbjct: 16 LRACLRCRLVKTYDQFRDSGCENCP-FFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAA 74 Query: 341 KWQRISRFCKGVYAISVSGRLP 406 +W RI +F G Y ++VS LP Sbjct: 75 RWLRIGKFAPGCYTLAVSEALP 96 >At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC3) identical to cyclic nucleotide and calmodulin-regulated ion channel GI:4581201 from [Arabidopsis thaliana] Length = 706 Score = 28.7 bits (61), Expect = 2.8 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = +2 Query: 176 VCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRI 355 V S++KT + +G + F R S N + +N ++ VMNP DS++ W +I Sbjct: 28 VSSVMKTVRRSFEKGSEKIRTFKRPLSVHSNK-NKENNKKKKILRVMNPNDSYLQSWNKI 86 >At2g16770.1 68415.m01923 expressed protein Length = 249 Score = 28.3 bits (60), Expect = 3.7 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Frame = -3 Query: 335 PSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEEIH-HNCHSLHIQI 204 PSC DS + + C H H E H H C +H +I Sbjct: 18 PSCSMDSFFDELLRDSHACTHTHTCNPPGPENTHTHTCLHVHTKI 62 >At5g59920.1 68418.m07514 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 710 Score = 27.9 bits (59), Expect = 4.9 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -3 Query: 269 HYLCYFSCEEIHHNCHSLH 213 H C EE++H CHS+H Sbjct: 160 HVNCVHLSEEVNHPCHSIH 178 >At3g11390.1 68416.m01387 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 710 Score = 27.1 bits (57), Expect = 8.5 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = -3 Query: 299 HQSYYLCNHRHYLCYFSCEEIHHNCHS 219 H S ++ HY C E HH CH+ Sbjct: 142 HMSPLTYHNYHYYCKTCDMEFHHGCHT 168 >At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3) plant glutamate receptor family, PMID:11379626 Length = 933 Score = 27.1 bits (57), Expect = 8.5 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 385 YCINSFTKSTNSLPFANPAVFRIHYCN 305 +CI+ FT + N LP+A P F I Y N Sbjct: 493 FCIDVFTAAVNLLPYAVPVKF-IPYGN 518 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,653,591 Number of Sequences: 28952 Number of extensions: 243507 Number of successful extensions: 701 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 699 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1062855648 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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