Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e06
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63670.1 68418.m07993 transcription initiation protein-relate...    92   2e-19
At5g08565.1 68418.m01019 expressed protein                             92   3e-19
At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel...    29   2.8  
At2g16770.1 68415.m01923 expressed protein                             28   3.7  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    28   4.9  
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    27   8.5  
At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3...    27   8.5  

>At5g63670.1 68418.m07993 transcription initiation protein-related
           contains weak similarity to Transcription initiation
           protein SPT4 homolog 1 (Swiss-Prot:Q16550) [Mus
           musculus]
          Length = 116

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 38/82 (46%), Positives = 56/82 (68%)
 Frame = +2

Query: 161 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340
           LRACL C L+KT+DQF   GC+NC  F +M+ + + + + T+ NF+G+I+VM+P  SW  
Sbjct: 16  LRACLRCRLVKTYDQFRDAGCENCP-FFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAA 74

Query: 341 KWQRISRFCKGVYAISVSGRLP 406
           +W RI +F  G Y ++VS  LP
Sbjct: 75  RWLRIGKFAPGCYTLAVSEPLP 96


>At5g08565.1 68418.m01019 expressed protein
          Length = 116

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 37/82 (45%), Positives = 56/82 (68%)
 Frame = +2

Query: 161 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 340
           LRACL C L+KT+DQF   GC+NC  F +++ + + + D T+ NF+G+I++M+P  SW  
Sbjct: 16  LRACLRCRLVKTYDQFRDSGCENCP-FFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAA 74

Query: 341 KWQRISRFCKGVYAISVSGRLP 406
           +W RI +F  G Y ++VS  LP
Sbjct: 75  RWLRIGKFAPGCYTLAVSEALP 96


>At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC3) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           GI:4581201 from [Arabidopsis thaliana]
          Length = 706

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 176 VCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRI 355
           V S++KT  +   +G +    F R  S   N  +  +N    ++ VMNP DS++  W +I
Sbjct: 28  VSSVMKTVRRSFEKGSEKIRTFKRPLSVHSNK-NKENNKKKKILRVMNPNDSYLQSWNKI 86


>At2g16770.1 68415.m01923 expressed protein
          Length = 249

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -3

Query: 335 PSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEEIH-HNCHSLHIQI 204
           PSC  DS      +  + C H H       E  H H C  +H +I
Sbjct: 18  PSCSMDSFFDELLRDSHACTHTHTCNPPGPENTHTHTCLHVHTKI 62


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 269 HYLCYFSCEEIHHNCHSLH 213
           H  C    EE++H CHS+H
Sbjct: 160 HVNCVHLSEEVNHPCHSIH 178


>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 299 HQSYYLCNHRHYLCYFSCEEIHHNCHS 219
           H S    ++ HY C     E HH CH+
Sbjct: 142 HMSPLTYHNYHYYCKTCDMEFHHGCHT 168


>At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3)
           plant glutamate receptor family, PMID:11379626
          Length = 933

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 385 YCINSFTKSTNSLPFANPAVFRIHYCN 305
           +CI+ FT + N LP+A P  F I Y N
Sbjct: 493 FCIDVFTAAVNLLPYAVPVKF-IPYGN 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,591
Number of Sequences: 28952
Number of extensions: 243507
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)