Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e05
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23925 Cluster: YELA; n=2; Dictyostelium discoideum|Rep...    34   2.6  
UniRef50_UPI00006CB04D Cluster: TPR Domain containing protein; n...    33   4.6  
UniRef50_UPI0000F1F20A Cluster: PREDICTED: similar to Ddef1 prot...    33   6.1  
UniRef50_Q170G6 Cluster: Eukaryotic translation initiation facto...    33   6.1  

>UniRef50_Q23925 Cluster: YELA; n=2; Dictyostelium discoideum|Rep:
           YELA - Dictyostelium discoideum (Slime mold)
          Length = 909

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +1

Query: 121 KMSESNSPSVLSYLRQYRFQRKPNESSGSGNQVTIKASTSSSQPQIIRMPAPNHTGQRQN 300
           K++ SNSPS+ S ++Q + Q+  N ++ + N  T   +T+SS   I      N+  + + 
Sbjct: 470 KVARSNSPSLSSVVKQPQSQQNNNNNNNNNNNNTTITTTTSSNNNINNNNNNNNNNKIKE 529

Query: 301 NP 306
           +P
Sbjct: 530 SP 531


>UniRef50_UPI00006CB04D Cluster: TPR Domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: TPR Domain containing
           protein - Tetrahymena thermophila SB210
          Length = 517

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 100 IYTIYNIKMSESNSPSVLSYL-RQYRFQRKPNESSGSGNQVTIKASTSSSQPQI 258
           +Y  YNI  +++N  S+L     Q       N+S  + N +  + S SS+ PQI
Sbjct: 432 VYNSYNINKNQNNQQSILKLTPNQIGLNSSVNQSINNFNNINYQNSISSNSPQI 485


>UniRef50_UPI0000F1F20A Cluster: PREDICTED: similar to Ddef1
           protein; n=2; Danio rerio|Rep: PREDICTED: similar to
           Ddef1 protein - Danio rerio
          Length = 1100

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +2

Query: 308 LWSTRGSGYQIPILTIQHRQQRKQPSKLNLLQLSKRDALGTC*KCFQTFHH 460
           +W  R    Q   LTI H    K P+KLNLL    + +L    KCF    H
Sbjct: 321 MWQKRKCTVQNCYLTIAHGTPNKSPAKLNLLTCQVKPSLEDK-KCFDLISH 370


>UniRef50_Q170G6 Cluster: Eukaryotic translation initiation factor 4
           gamma; n=2; Aedes aegypti|Rep: Eukaryotic translation
           initiation factor 4 gamma - Aedes aegypti (Yellowfever
           mosquito)
          Length = 967

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +2

Query: 176 FRENQMNPQAPVTKLQLRLLHRVLNHK**GCQLQTTLANVKTILLWSTRGSGYQIPI 346
           F+ N M PQ PV  LQ+R     L  K     ++T L   +     S +GSGY  P+
Sbjct: 364 FKRNLMTPQNPVEDLQMRPTPNSLLFKTQNMNMKTQLPISQAPSSQSGKGSGYSAPL 420


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,797,714
Number of Sequences: 1657284
Number of extensions: 10826985
Number of successful extensions: 27773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27761
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)