Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e05
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 28 1.0
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 4.2
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 26 5.5
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 26 5.5
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 26 5.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 5.5
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 25 9.7
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc... 25 9.7
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 9.7
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 9.7
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.7
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 418 RFRNMLEMFPDISPLLVKNKLVKHGWN 498
R N + +F ++S LLVK+++ K+ WN
Sbjct: 258 RRHNFVGLFVELSKLLVKDRIDKNTWN 284
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 103 YTIYNIKMSESNSPSVLSYLRQYRFQRKPNESS 201
Y I ++ S+ +SPSV++ Y F K ESS
Sbjct: 328 YMIISLDFSDISSPSVMNIHPLYSFSSKSLESS 360
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +1
Query: 106 TIYNIKMSESNSPSVLSYL---RQYRFQRKPNESSGSGNQVTIKASTSSSQPQIIRMPAP 276
++ N K +SNS + ++ + ++Y F+RKP SS + + +S+SSS + + P
Sbjct: 91 SLLNYKSLKSNSTTTVATVPSEKRYFFRRKPKTSSTTNS----LSSSSSSVSHMNQDANP 146
Query: 277 NHT 285
N T
Sbjct: 147 NST 149
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = -2
Query: 453 NVWKHF*HVPKASLFDSWSKFNLEGCFLCWRCWIVRIGIW*PDPLVDH 310
++W F H+P + G F+ W I + IW P + H
Sbjct: 163 SIWPSFSHIPNTMAKSGTETYQWVGFFIFW--LISNVAIWFPVYQIRH 208
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = -2
Query: 453 NVWKHF*HVPKASLFDSWSKFNLEGCFLCWRCWIVRIGIW*PDPLVDH 310
++W F H+P + G F+ W + I IW P + H
Sbjct: 165 SIWPSFSHIPNTMAKSGTETYQWVGFFIFW--LLSNIAIWFPVHQIRH 210
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +1
Query: 109 IYNIKMSESNSPSVLSYLRQYRFQRKPNESSGSGNQVTIKASTSSSQPQIIRMPAPNH 282
++ IK SE +PS LS + Y PN S S ST++S I P H
Sbjct: 33 MFGIK-SELLNPSELSAVGSYSNDICPNRQSSSSTAADTSPSTNASNTN-ISFPEQEH 88
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 330 PDPLVDHNRIVLTLASVVWSWHPYYLWLRTRCRSLNCNLVTGA 202
PDP+ H +V+ + SW+ L T C L+ ++GA
Sbjct: 32 PDPIFRHKVLVIIHKLAISSWNRIPL---TLCNKLHIKRISGA 71
>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 97 RIYTIYNIKMSESNSPSVLSYLRQYRFQRKPNES 198
RI + +S+ + LSYLRQ RF+ P ES
Sbjct: 136 RIVVLKENGLSKRPRRAYLSYLRQPRFRLPPVES 169
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 160 LRQYRFQRKPNESSGS--GNQVTIKASTSSSQPQIIRMPAPNHT 285
+RQ + N+S+ S +V+ ST+ S Q I P P HT
Sbjct: 361 IRQSLLDAQSNDSTNSLPSTEVSQPDSTNISNEQEIVQPQPTHT 404
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 169 YRFQRKPNESSGSGNQVTIKASTSSSQPQIIRMPAPNHTGQRQNNPVV 312
YR + + +E + S NQVT SQ + P NH Q P +
Sbjct: 94 YRNRGERSELAASNNQVTHIDQEHPSQTKSTSQPPSNHLPAFQQIPPI 141
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 133 SNSPSVLSYLRQYRFQ 180
SNSPS L +LR+ +FQ
Sbjct: 98 SNSPSFLFFLREQKFQ 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,173
Number of Sequences: 5004
Number of extensions: 47535
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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