Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e05
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21223| Best HMM Match : I-set (HMM E-Value=2.8e-11)                 30   1.9  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 30   1.9  
SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2)                     28   5.9  

>SB_21223| Best HMM Match : I-set (HMM E-Value=2.8e-11)
          Length = 90

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 275 QTTLANVKTILLWSTRGSGYQIPILTIQHRQQRKQP 382
           Q T  ++ ++LLW    +GY  P+LT Q   Q   P
Sbjct: 7   QDTAIDLGSVLLWHCTATGYPTPVLTWQKNGQGFNP 42


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +1

Query: 172 RFQRKPNESSG----SGNQVTIKASTSSSQPQIIRMPAPNHTGQRQNNP 306
           RFQ +P+  +     +G  + +  + +S++P    MPAP ++GQ  N P
Sbjct: 267 RFQLQPHVLAQIQALTGMNIRLPTAQNSNEPHDQGMPAPQYSGQMPNTP 315


>SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 193 ESSGSGNQVTIKASTSSSQPQIIRMPAPNHTGQRQNNPVVVYKRIR 330
           ES+ S    +I +ST+S+QP I             NN +V   +IR
Sbjct: 3   ESNASTESTSISSSTASNQPSITNSLTTTSVAASSNNALVADTKIR 48


>SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 245 LNHK**GCQLQTTLANVKTILLWSTRGSGYQIPILTIQHR 364
           LNH   GC  QT    +++ L+ S RG GY+I  + I+ R
Sbjct: 190 LNH---GCPQQTEALAIESHLVLSNRGFGYRITAVLIKPR 226


>SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2)
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 100 IYTIYNIKMSESNSPS--VLSYLRQYRFQRKPNESSGSGNQVTIKASTSSSQP 252
           I+ +  ++ + S++P+  VL  LRQ R       + G  N++ +  STSSS P
Sbjct: 239 IHRLRQLRSTSSSTPTFGVLHRLRQLRSTSSSTPTLGVLNRLRLPQSTSSSTP 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,325,387
Number of Sequences: 59808
Number of extensions: 354541
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)