BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e05 (661 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_21223| Best HMM Match : I-set (HMM E-Value=2.8e-11) 30 1.9 SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 30 1.9 SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5 SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4 SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2) 28 5.9 >SB_21223| Best HMM Match : I-set (HMM E-Value=2.8e-11) Length = 90 Score = 29.9 bits (64), Expect = 1.9 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 275 QTTLANVKTILLWSTRGSGYQIPILTIQHRQQRKQP 382 Q T ++ ++LLW +GY P+LT Q Q P Sbjct: 7 QDTAIDLGSVLLWHCTATGYPTPVLTWQKNGQGFNP 42 >SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) Length = 1463 Score = 29.9 bits (64), Expect = 1.9 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = +1 Query: 172 RFQRKPNESSG----SGNQVTIKASTSSSQPQIIRMPAPNHTGQRQNNP 306 RFQ +P+ + +G + + + +S++P MPAP ++GQ N P Sbjct: 267 RFQLQPHVLAQIQALTGMNIRLPTAQNSNEPHDQGMPAPQYSGQMPNTP 315 >SB_10138| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 327 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +1 Query: 193 ESSGSGNQVTIKASTSSSQPQIIRMPAPNHTGQRQNNPVVVYKRIR 330 ES+ S +I +ST+S+QP I NN +V +IR Sbjct: 3 ESNASTESTSISSSTASNQPSITNSLTTTSVAASSNNALVADTKIR 48 >SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 336 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +2 Query: 245 LNHK**GCQLQTTLANVKTILLWSTRGSGYQIPILTIQHR 364 LNH GC QT +++ L+ S RG GY+I + I+ R Sbjct: 190 LNH---GCPQQTEALAIESHLVLSNRGFGYRITAVLIKPR 226 >SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2) Length = 596 Score = 28.3 bits (60), Expect = 5.9 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +1 Query: 100 IYTIYNIKMSESNSPS--VLSYLRQYRFQRKPNESSGSGNQVTIKASTSSSQP 252 I+ + ++ + S++P+ VL LRQ R + G N++ + STSSS P Sbjct: 239 IHRLRQLRSTSSSTPTFGVLHRLRQLRSTSSSTPTLGVLNRLRLPQSTSSSTP 291 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,325,387 Number of Sequences: 59808 Number of extensions: 354541 Number of successful extensions: 955 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 916 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 955 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1693527500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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