Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e05
         (661 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF051933-1|AAC73052.1| 1097|Drosophila melanogaster cyclin T pro...    29   4.2  
AE014296-2932|AAS64974.1|  884|Drosophila melanogaster CG6292-PA...    29   4.2  
AE014296-2931|AAF49325.1| 1097|Drosophila melanogaster CG6292-PB...    29   4.2  
AY122257-1|AAM52769.1| 1608|Drosophila melanogaster SD08305p pro...    29   5.6  
AY051912-1|AAK93336.1|  801|Drosophila melanogaster LD39933p pro...    29   5.6  
AF324426-1|AAG48328.1| 2531|Drosophila melanogaster transcriptio...    29   5.6  
AE014296-3230|AAF49103.2| 2531|Drosophila melanogaster CG8491-PA...    29   5.6  
AE014134-2350|AAF53302.2|  800|Drosophila melanogaster CG7110-PB...    29   5.6  
BT022263-1|AAY54679.1|  268|Drosophila melanogaster IP08159p pro...    29   7.4  
BT004865-1|AAO45221.1|  233|Drosophila melanogaster LD44422p pro...    29   7.4  
AE014296-1784|AAF50179.1|  233|Drosophila melanogaster CG6674-PA...    29   7.4  
AE013599-488|AAF59200.1|  226|Drosophila melanogaster CG1946-PA ...    29   7.4  
AY229970-1|AAP04481.1| 2645|Drosophila melanogaster bitesize iso...    28   9.8  
AE014297-1904|AAX52954.1| 2645|Drosophila melanogaster CG33555-P...    28   9.8  
AE013599-3984|AAM70799.1|  506|Drosophila melanogaster CG30427-P...    28   9.8  

>AF051933-1|AAC73052.1| 1097|Drosophila melanogaster cyclin T
           protein.
          Length = 1097

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 196 SSGSGNQVTIKASTSSS-QPQIIRMPAPNHTGQRQNNPVVV 315
           SSGSG+Q +  +S+SSS QP    MP   H   R   PV V
Sbjct: 433 SSGSGSQHSSSSSSSSSQQPGRPSMPVDYHKSSRGMPPVGV 473


>AE014296-2932|AAS64974.1|  884|Drosophila melanogaster CG6292-PA,
           isoform A protein.
          Length = 884

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 196 SSGSGNQVTIKASTSSS-QPQIIRMPAPNHTGQRQNNPVVV 315
           SSGSG+Q +  +S+SSS QP    MP   H   R   PV V
Sbjct: 220 SSGSGSQRSSSSSSSSSQQPGRPSMPVDYHKSSRGMPPVGV 260


>AE014296-2931|AAF49325.1| 1097|Drosophila melanogaster CG6292-PB,
           isoform B protein.
          Length = 1097

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 196 SSGSGNQVTIKASTSSS-QPQIIRMPAPNHTGQRQNNPVVV 315
           SSGSG+Q +  +S+SSS QP    MP   H   R   PV V
Sbjct: 433 SSGSGSQRSSSSSSSSSQQPGRPSMPVDYHKSSRGMPPVGV 473


>AY122257-1|AAM52769.1| 1608|Drosophila melanogaster SD08305p protein.
          Length = 1608

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 133  SNSPSVLSYLRQYR--FQRKPNESSGSG-NQVTIKASTSSSQPQIIRMPAPNHTGQRQNN 303
            +NS   LS + + R  FQ++  +  G G N +  +   S  QP   +   PN   Q+Q N
Sbjct: 1147 ANSKQALSQMLRQRQPFQQQAQQGPGGGFNPMQQQPQASQQQPGPQQQMNPNQMRQQQMN 1206

Query: 304  P 306
            P
Sbjct: 1207 P 1207


>AY051912-1|AAK93336.1|  801|Drosophila melanogaster LD39933p
           protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 24/108 (22%), Positives = 46/108 (42%)
 Frame = +2

Query: 284 LANVKTILLWSTRGSGYQIPILTIQHRQQRKQPSKLNLLQLSKRDALGTC*KCFQTFHHC 463
           LAN + +L+ S R   Y+ P  +++   + ++P   N   + + D +        TF+  
Sbjct: 103 LANQRQLLVGSARP--YKSPDASMRRNLENERPLSENRFPIHRSDDMEQW--VTDTFYSY 158

Query: 464 LSKTN*SNMAGMKSVQEMNS*NTTLRVMTKDPHPPSSVHHLIQKLMVT 607
               N  N      ++E    N    +  +  HPP+S HH  +++  T
Sbjct: 159 FPGFNNENQKRQNYLRERQRENQQNFLKHQMLHPPASKHHKAEQVRKT 206


>AF324426-1|AAG48328.1| 2531|Drosophila melanogaster transcriptional
            coactivator kohtaloprotein.
          Length = 2531

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 133  SNSPSVLSYLRQYR--FQRKPNESSGSG-NQVTIKASTSSSQPQIIRMPAPNHTGQRQNN 303
            +NS   LS + + R  FQ++  +  G G N +  +   S  QP   +   PN   Q+Q N
Sbjct: 2110 ANSKQALSQMLRQRQPFQQQAQQGPGGGFNPMQQQPQASQQQPGPQQQMNPNQMRQQQMN 2169

Query: 304  P 306
            P
Sbjct: 2170 P 2170


>AE014296-3230|AAF49103.2| 2531|Drosophila melanogaster CG8491-PA
            protein.
          Length = 2531

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 133  SNSPSVLSYLRQYR--FQRKPNESSGSG-NQVTIKASTSSSQPQIIRMPAPNHTGQRQNN 303
            +NS   LS + + R  FQ++  +  G G N +  +   S  QP   +   PN   Q+Q N
Sbjct: 2110 ANSKQALSQMLRQRQPFQQQAQQGPGGGFNPMQQQPQASQQQPGPQQQMNPNQMRQQQMN 2169

Query: 304  P 306
            P
Sbjct: 2170 P 2170


>AE014134-2350|AAF53302.2|  800|Drosophila melanogaster CG7110-PB
           protein.
          Length = 800

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 24/108 (22%), Positives = 46/108 (42%)
 Frame = +2

Query: 284 LANVKTILLWSTRGSGYQIPILTIQHRQQRKQPSKLNLLQLSKRDALGTC*KCFQTFHHC 463
           LAN + +L+ S R   Y+ P  +++   + ++P   N   + + D +        TF+  
Sbjct: 103 LANQRQLLVGSARP--YKSPDASMRRNLENERPLSENRFPIHRSDDMEQW--VTDTFYSY 158

Query: 464 LSKTN*SNMAGMKSVQEMNS*NTTLRVMTKDPHPPSSVHHLIQKLMVT 607
               N  N      ++E    N    +  +  HPP+S HH  +++  T
Sbjct: 159 FPGFNNENQKRQNYLRERQRENQQNFLKHQMLHPPASKHHKAEQVRKT 206


>BT022263-1|AAY54679.1|  268|Drosophila melanogaster IP08159p
           protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 385 QVELTPAIKERRFRNMLEMFPDISPLLVKNK 477
           QV   P    RRF+N+++ F  ISPLL K +
Sbjct: 167 QVANPPDSSLRRFQNVVKKFTGISPLLPKGR 197


>BT004865-1|AAO45221.1|  233|Drosophila melanogaster LD44422p
           protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = +1

Query: 103 YTIYNIKMSE-SNSPSVLSYLRQYRFQRK----PNESSGSGNQVTIKASTSSSQ 249
           Y++ ++ +SE SNS + LS+LRQ   QR+     NES  +  ++  K ++  S+
Sbjct: 112 YSLSDVDISEQSNSAAALSFLRQMDAQREAEGVDNESPPTDGKIEFKRTSKLSR 165


>AE014296-1784|AAF50179.1|  233|Drosophila melanogaster CG6674-PA
           protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = +1

Query: 103 YTIYNIKMSE-SNSPSVLSYLRQYRFQRK----PNESSGSGNQVTIKASTSSSQ 249
           Y++ ++ +SE SNS + LS+LRQ   QR+     NES  +  ++  K ++  S+
Sbjct: 112 YSLSDVDISEQSNSAAALSFLRQMDAQREAEGVDNESPPTDGKIEFKRTSKLSR 165


>AE013599-488|AAF59200.1|  226|Drosophila melanogaster CG1946-PA
           protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 385 QVELTPAIKERRFRNMLEMFPDISPLLVKNK 477
           QV   P    RRF+N+++ F  ISPLL K +
Sbjct: 125 QVANPPDSSLRRFQNVVKKFTGISPLLPKGR 155


>AY229970-1|AAP04481.1| 2645|Drosophila melanogaster bitesize
           isoform 2 protein.
          Length = 2645

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 109 IYNIKMSESNSPSVLSYLRQYRF-QRKPNESSGSGNQ 216
           I NIKMS+  SPS  ++L+   +    P+E+S + +Q
Sbjct: 519 IENIKMSDEASPSTAAHLQSESYAASSPDEASSNSSQ 555


>AE014297-1904|AAX52954.1| 2645|Drosophila melanogaster CG33555-PC,
           isoform C protein.
          Length = 2645

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 109 IYNIKMSESNSPSVLSYLRQYRF-QRKPNESSGSGNQ 216
           I NIKMS+  SPS  ++L+   +    P+E+S + +Q
Sbjct: 519 IENIKMSDEASPSTAAHLQSESYAASSPDEASSNSSQ 555


>AE013599-3984|AAM70799.1|  506|Drosophila melanogaster CG30427-PC,
           isoform C protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 345 IGIW*PDPLVDHNRIVLTLASVVWSWHPYYL 253
           +G+W PD  +  ++   T+ ++++ W P YL
Sbjct: 339 VGLWYPDGNMTSSKFYHTICTILFMWLPAYL 369


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,603,553
Number of Sequences: 53049
Number of extensions: 510405
Number of successful extensions: 1770
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)